LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_Fleur11_x_A.ipaensis-A.duranensis_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps B06
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
QTL_development
QTL_pod
QTL_seed
QTL_stress-tolerance
QTL_whole-plant
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a [ View Map Set Info ]
Map Name: B06
Map Start: 0 cM
Map Stop: 104.4 cM
Features by Type:
1 QTL_development
4 QTL_pod
1 QTL_seed
1 QTL_stress-tolerance
3 QTL_whole-plant
12 SSR
22 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 22 of 22.
peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a - B06
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AC2C02_B2 SSR 0 peanut - TT_AhConsensus_GautamiFonceka2012_a - B06 AC2C02_B2 SSR 74.96 (cM) Automated name-based, Automated name-based View Maps
Stature 1-5 QTL_whole-plant 7 - 34 No other positions
Seed width 1-9 QTL_seed 8 - 62 No other positions
Pod beak 1-8 QTL_pod 13 - 87 No other positions
Pod beak 1-7 QTL_pod 14 - 80 No other positions
Pod width 1-10 QTL_pod 16 - 83 No other positions
TC3H07_B SSR 21.7 No other positions
Pod width 1-11 QTL_pod 22 - 64 No other positions
PM137_B SSR 34.5 No other positions
TC24B05_B SSR 42.6 No other positions
TC19F05_B SSR 44.9 No other positions
seq19A05_B SSR 48.3 No other positions
seq3C02_B1 SSR 56.4 No other positions
PM210_B SSR 69.1 No other positions
TC1A02_B SSR 77.4 No other positions
TC11A04_B SSR 77.4 peanut - TT_VG9514_x_TAG24_a - A06 TC11A04_b SSR 69.1 (cM) Automated name-based, Automated name-based View Maps
Aboveground weight 1-3 QTL_whole-plant 93 - 104.4 No other positions
Haulm weight 1-4 QTL_whole-plant 93 - 104.4 No other positions
TC4D09_B SSR 93.9 No other positions
Drought tolerance 1-13 QTL_stress-tolerance 94 - 104.4 No other positions
Seq18G01_B SSR 104.4 No other positions
Pod maturity, synchronicity 2-2 QTL_development 25.8 - 91.4 No other positions