LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_ICGS44_x_ICGS76_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG05
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_ICGS44_x_ICGS76_a [ View Map Set Info ]
Map Name: LG05
Map Start: 0 cM
Map Stop: 57 cM
Features by Type:
11 SSR
11 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 11 of 11.
peanut - TT_ICGS44_x_ICGS76_a - LG05
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
IPAHM356 SSR 0 peanut - TT_ICGS76_x_CSMG84-1_a - LG05 IPAHM356 SSR 90.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhV IPAHM356 SSR 6.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV IPAHM356 SSR 27 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV IPAHM356 SSR 176 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 IPAHM356 SSR 59.229 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 IPAHM356 SSR 71.55 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV IPAHM356 SSR 8.239 (cM) Automated name-based, Automated name-based View Maps
TC3A12 SSR 5.1 peanut - TT_TAG24_x_ICGV86031_a - LG_AhV TC3A12 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A05 TC3A12 SSR 110 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG08 Ah1TC3A12 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 TC3A12 SSR 65.195 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhV TC3A12 SSR 17.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV TC3A12 SSR 16.046 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV TC3A12 SSR 55.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV TC3A12 SSR 134.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG05 TC3A12 SSR 106.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 TC3A12 SSR 91.73 (cM) Automated name-based, Automated name-based View Maps
PM45 SSR 5.1 peanut - AA_A.duranensis_x_A.stenosperma_a - A05 PM45 SSR 100.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 PM45 SSR 144.95 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV PM45 SSR 181.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 PM45 SSR 56.876 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 PM45 SSR 95.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 PM45 SSR 24.367 (cM) Automated name-based, Automated name-based View Maps
pPGSSeq19E09 SSR 7.1 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV pPGSSeq19E09 SSR 183.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 Seq19E09 SSR 56.682 (cM) Automated name-based, Automated name-based View Maps
GM1577 SSR 8.7 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 GM1577 SSR 53.751 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 GM1577 SSR 82.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV GM1577 SSR 10.592 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG05 GM1577 SSR 44.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 GM1577 SSR 53.778 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhV GM1577 SSR 11.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG19 GM1577 SSR 23.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV GM1577 SSR 43.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV GM1577 SSR 184.7 (cM) Automated name-based, Automated name-based View Maps
PM36 SSR 8.7 peanut - BB_A.ipaensis_x_A.magna_b - B05 PM36 SSR 55.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 PM36.A05 SSR 160.26 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIV PM36 SSR 57.9 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB05 PM36 SSR 16.848 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG8 PM36 SSR 26.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - B05 PM36 SSR 62.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A05 PM36 SSR 100.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 PM36.B05 SSR 59.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIV PM36 SSR 25.515 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV PM36 SSR 184.7 (cM) Automated name-based, Automated name-based View Maps
TC6E01 SSR 9.6 peanut - BB_A.ipaensis_x_A.magna_a - BB05 TC6E01 SSR 11.878 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV TC6E01 SSR 174.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 TC6E01 SSR 53.65 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TC6E01 SSR 95.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 TC6E01 SSR 24.142 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 TC6E01.B05 SSR 33.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG05 TC6E01 SSR 91.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV TC6E01 SSR 31.343 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A05 TC6E01 SSR 100.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhV TC6E01 SSR 81.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 TC6E01.A05 SSR 164.23 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhV TC6E01 SSR 16.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV TC6E01 SSR 96.9 (cM) Automated name-based, Automated name-based View Maps
pPGSSeq2F10 SSR 10.6 peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 seq2F10 SSR 170.37 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 Seq2F10 SSR 50.573 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV pPGSSeq2F10 SSR 186.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 Seq2F10 SSR 23.309 (cM) Automated name-based, Automated name-based View Maps
TC3G05 SSR 11.6 peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 TC3G05 SSR 144.35 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 TC3G05 SSR 53.133 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV TC3G05 SSR 187.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TC3G05 SSR 75.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 TC3G05 SSR 27.129 (cM) Automated name-based, Automated name-based View Maps
GM632 SSR 19.5 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 GM632 SSR 43.029 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV GM632 SSR 195.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 GM632 SSR 179.31 (cM) Automated name-based, Automated name-based View Maps
IPAHM167 SSR 57 peanut - TT_AhConsensus_GautamiFonceka2012_a - B02 IPAHM167.B02 SSR 102.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV IPAHM167 SSR 233 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 IPAHM167.A05 SSR 215.93 (cM) Automated name-based, Automated name-based View Maps