LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_ICGS76_x_CSMG84-1_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG07
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_ICGS76_x_CSMG84-1_a [ View Map Set Info ]
Map Name: LG07
Map Start: 0 cM
Map Stop: 138.9 cM
Features by Type:
10 SSR
10 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 10 of 10.
peanut - TT_ICGS76_x_CSMG84-1_a - LG07
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM1979 SSR 0 peanut - TT_AhComposite_SujayGowda2012_a - AhIX GM1979 SSR 10.484 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIX GM1979 SSR 21.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIX GM1979 SSR 7.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII GM1979 SSR 33.01 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 GM1979 SSR 52.84 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 GM1979 SSR 54.475 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 GM1979.B09 SSR 14.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A07 GM1979.A07 SSR 0 (cM) Automated name-based, Automated name-based View Maps
GM1919 SSR 28.8 peanut - TT_AhConsensus_GautamiFonceka2012_a - A04 GM1919.A04 SSR 69.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII GM1919 SSR 75.66 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 GM1919 SSR 74.917 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A04 GM1919 SSR 81.837 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG07 GM1919 SSR 76.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A07 GM1919.A07 SSR 28.8 (cM) Automated name-based, Automated name-based View Maps
IPAHM108 SSR 38.7 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII IPAHM108 SSR 99.36 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG07 IPAHM108 SSR 99.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXVII IPAHM108 SSR 20.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A04 IPAHM108.A04 SSR 115.79 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXVII IPAHM108 SSR 12.173 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B04 IPAHM108.B04 SSR 113.87 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXVII IPAHM108 SSR 40.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A07 IPAHM108.A07 SSR 38.7 (cM) Automated name-based, Automated name-based View Maps
pPGSSeq18C05 SSR 38.7 peanut - TT_TAG24_x_ICGV86031_a - LG_AhVII pPGSSeq18C05 SSR 58 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B04 seq18C05.B04 SSR 177.66 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 Seq18C05 SSR 67.811 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII pPGSSeq18C05 SSR 99.36 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG07 pPGSSeq18C05 SSR 99.8 (cM) Automated name-based, Automated name-based View Maps
S118 SSR 64.5 peanut - TT_ICGS44_x_ICGS76_a - LG07 S118 SSR 42.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A04 S118.A04 SSR 57.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A07 S118.A07 SSR 64.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII S118 SSR 126.63 (cM) Automated name-based, Automated name-based View Maps
RN32H4 SSR 92.1 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII RN32H4 SSR 151.29 (cM) Automated name-based, Automated name-based View Maps
GM1076 SSR 114.7 peanut - TT_VG9514_x_TAG24_a - A07 GM1076 SSR 23.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 GM1076 SSR 28.082 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 GM1076.B07 SSR 40.57 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXVIII GM1076 SSR 35.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXVIII GM1076 SSR 48.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXVIII GM1076 SSR 26.627 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII GM1076 SSR 173.89 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A07 GM1076.A07 SSR 114.98 (cM) Automated name-based, Automated name-based View Maps
IPAHM290 SSR 115.6 peanut - TT_AhConsensus_GautamiFonceka2012_a - A07 IPAHM290 SSR 115.88 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII IPAHM290 SSR 174.79 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 IPAHM290 SSR 80.694 (cM) Automated name-based, Automated name-based View Maps
PM204 SSR 118 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA07 PM204 SSR 40.217 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA07 PM204 SSR 9.396 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A07 PM204 SSR 166.52 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A07 PM204 SSR 60.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII PM204 SSR 177.19 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A07 PM204 SSR 53.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 PM204 SSR 75.617 (cM) Automated name-based, Automated name-based View Maps
ML4D02 SSR 138.9 peanut - TT_AhConsensus_GautamiFonceka2012_a - A07 ML4D02 SSR 183.06 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A09 ML4D02 SSR 26 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII ML4D02 SSR 198.09 (cM) Automated name-based, Automated name-based View Maps