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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps TA02
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a [ View Map Set Info ]
Map Name: TA02
Map Start: 0 cM
Map Stop: 90.158 cM
Features by Type:
62 SSR
5 transposon
67 Total

Map Features

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Items 1 to 25 of 67.       of 3 | Next
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA02
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AhTE0486 transposon 0 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 AhTE0486 transposon 0 (cM) Automated name-based, Automated name-based View Maps
AHGS2490_t1 SSR 2.082 No other positions
AHGS1677_t1 SSR 8.077 No other positions
TC42A05 SSR 14.565 peanut - AA_A.duranensis_x_A.stenosperma_d - A02 TC42A05 SSR 10.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA02 TC42A05 SSR 0.409 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 TC42A05 SSR 18.145 (cM) Automated name-based, Automated name-based View Maps
AHGS1289 SSR 14.57 peanut - AA_A.duranensis_x_A.stenosperma_b - AA02 AHGS1289 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB09 AHGS1289 SSR 12.655 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B09 AHGS1289 SSR 60.8 (cM) Automated name-based, Automated name-based View Maps
AHS2463 SSR 15.918 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 AHS2463 SSR 16.225 (cM) Automated name-based, Automated name-based View Maps
499367 SSR 20.129 No other positions
498998 SSR 22.377 No other positions
AHS0327 SSR 23.964 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 AHS0327 SSR 12.177 (cM) Automated name-based, Automated name-based View Maps
AHGS1940_t1 SSR 31.107 No other positions
AhTE0465 transposon 33.907 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 AhTE0465 transposon 24.351 (cM) Automated name-based, Automated name-based View Maps
AHS0519 SSR 34.402 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 AHS0519 SSR 25.416 (cM) Automated name-based, Automated name-based View Maps
AHS0314_t1 SSR 35.774 No other positions
Seq16C03 SSR 39.601 peanut - BB_A.ipaensis_x_A.magna_a - BB02 Seq16C03 SSR 34.863 (cM) Automated name-based, Automated name-based View Maps
TC28B01 SSR 43.576 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 TC28B01 SSR 32.831 (cM) Automated name-based, Automated name-based View Maps
499507 SSR 44.009 No other positions
Seq11G03 SSR 45.205 peanut - TT_TAG24_x_ICGV86031_a - LG_AhXX pPGSSeq11G03 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 Seq11G03 SSR 39.977 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhII Seq11G03 SSR 42.36 (cM) Automated name-based, Automated name-based View Maps
RI1F06 SSR 46.426 peanut - TT_AhConsensus_GautamiFonceka2012_a - A02 RI1F06.A02 SSR 17.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A02 RI1F06 SSR 46.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B02 RI1F06.B02 SSR 80.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA02 RI1F06 SSR 24.595 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhII RI1F06 SSR 57.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A02 RI1F06 SSR 192.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhII RI1F06 SSR 64.3 (cM) Automated name-based, Automated name-based View Maps
PM32_t1 SSR 47.64 No other positions
AHS1004_t1 SSR 48.337 No other positions
AHGS1521 SSR 48.742 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 AHGS1521 SSR 40.447 (cM) Automated name-based, Automated name-based View Maps
AHS1351 SSR 49.366 peanut - BB_A.ipaensis_x_A.magna_b - B03 AHS1351 SSR 24.3 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB03 AHS1351 SSR 6.593 (cM) Automated name-based, Automated name-based View Maps
AHGS1163 SSR 49.54 peanut - AA_A.duranensis_x_A.stenosperma_b - AA02 AHGS1163 SSR 22.804 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 AHGS1163 SSR 41.394 (cM) Automated name-based, Automated name-based View Maps
AHGS1300 SSR 50.19 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 AHGS1300 SSR 42.639 (cM) Automated name-based, Automated name-based View Maps
AHGS1495 SSR 50.398 peanut - AA_A.duranensis_x_A.stenosperma_b - AA02 AHGS1495 SSR 21.676 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 AHGS1495 SSR 40.915 (cM) Automated name-based, Automated name-based View Maps