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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a
(Reference Set)
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Correspondences
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Maps TA03
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a [ View Map Set Info ]
Map Name: TA03
Map Start: 0 cM
Map Stop: 112.056 cM
Features by Type:
141 SSR
13 transposon
154 Total

Map Features

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Items 1 to 25 of 154.       of 7 | Next
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA03
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AHGS2058_t1 SSR 0 No other positions
AHS0646 SSR 5.529 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 AHS0646 SSR 43.599 (cM) Automated name-based, Automated name-based View Maps
AHS3165 SSR 5.545 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 AHS3165 SSR 43.615 (cM) Automated name-based, Automated name-based View Maps
Seq3D09 SSR 9.826 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 Seq3D09 SSR 48.637 (cM) Automated name-based, Automated name-based View Maps
AhTE0050 transposon 10.681 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 AhTE0050 transposon 46.914 (cM) Automated name-based, Automated name-based View Maps
AHS0367 SSR 11.097 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 AHS0367 SSR 49.569 (cM) Automated name-based, Automated name-based View Maps
AHGS2286 SSR 11.809 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 AHGS2286 SSR 50.057 (cM) Automated name-based, Automated name-based View Maps
AHGS0235 SSR 12.291 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 AHGS0235 SSR 51.035 (cM) Automated name-based, Automated name-based View Maps
TC11E04 SSR 13.74 peanut - AA_A.duranensis_x_A.stenosperma_d - A03 TC11E04 SSR 41.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A03 TC11E04 SSR 92.28 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 TC11E04 SSR 55.801 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A03 TC11E04 SSR 173.2 (cM) Automated name-based, Automated name-based View Maps
AHGS1843_t1 SSR 17.186 No other positions
AHGS1838_t1 SSR 17.85 No other positions
TC22G05_t1 SSR 19.99 No other positions
Seq13A04 SSR 20.055 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 Seq13A04 SSR 58.554 (cM) Automated name-based, Automated name-based View Maps
TC1E06 SSR 20.913 peanut - TT_AhConsensus_GautamiFonceka2012_a - B03 TC1E06.B03 SSR 202.71 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB03 TC1E06 SSR 2.902 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIII TC1E06 SSR 10.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A03 TC1E06 SSR 157.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIII TC1E06 SSR 10.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A03 TC1E06.A03 SSR 92.28 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B03 TC1E06 SSR 30.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A03 TC1E06 SSR 40.4 (cM) Automated name-based, Automated name-based View Maps
AHS2053 SSR 21.848 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 AHS2053 SSR 60.308 (cM) Automated name-based, Automated name-based View Maps
AHS1891 SSR 22.032 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 AHS1891 SSR 60.133 (cM) Automated name-based, Automated name-based View Maps
Ag140 SSR 23.237 peanut - TT_AhConsensus_GautamiFonceka2012_a - A03 Ag140 SSR 92.28 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB03 Ag140 SSR 3.45 (cM) Automated name-based, Automated name-based View Maps
AHS0950 SSR 23.693 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 AHS0950 SSR 62.601 (cM) Automated name-based, Automated name-based View Maps
AHS0048_t1 SSR 23.974 No other positions
RN10F09 SSR 25.031 peanut - BB_A.ipaensis_x_A.magna_b - B03 RN10F09 SSR 36.8 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB03 RN10F09 SSR 11.552 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A03 RN10F09 SSR 156.6 (cM) Automated name-based, Automated name-based View Maps
TC39C01 SSR 26.025 No other positions
AHGS1637 SSR 26.527 peanut - BB_A.ipaensis_x_A.magna_a - BB03 AHGS1637 SSR 9.644 (cM) Automated name-based, Automated name-based View Maps
AHGS2025 SSR 27.165 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 AHGS2025 SSR 62.023 (cM) Automated name-based, Automated name-based View Maps
AHGS1854_t2 SSR 27.175 No other positions
AHGS1492 SSR 27.466 peanut - BB_A.ipaensis_x_A.magna_a - BB03 AHGS1492 SSR 11.782 (cM) Automated name-based, Automated name-based View Maps