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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set peanut-TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a
(Reference Set)
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Maps TA07
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
transposon
Other
 
Show Labels: None Landmarks All
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Features:		 No Yes
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 Correspondence Options
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a [ View Map Set Info ]
Map Name: TA07
Map Start: 0 cM
Map Stop: 54.625 cM
Features by Type:
67 SSR
3 transposon
70 Total

Map Features

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Items 1 to 25 of 70.       of 3 | Next
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA07
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
RN34A10 SSR 0 peanut - TT_ICGS44_x_ICGS76_a - LG09 RN34A10 SSR 56.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A07 RN34A10 SSR 87.87 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVI RN34A10 SSR 5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 RN34A10 SSR 27.55 (cM) Automated name-based, Automated name-based View Maps
AHS0001 SSR 5.401 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 AHS0001 SSR 37.524 (cM) Automated name-based, Automated name-based View Maps
AHGS2712_t2 SSR 6.817 No other positions
AHS2244 SSR 7.727 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 AHS2244 SSR 40.089 (cM) Automated name-based, Automated name-based View Maps
AHGS1693 SSR 9.154 peanut - BB_A.ipaensis_x_A.magna_a - BB10 AHGS1693 SSR 27.141 (cM) Automated name-based, Automated name-based View Maps
AHGS2221 SSR 13.007 peanut - BB_A.ipaensis_x_A.magna_a - BB07 AHGS2221 SSR 5.976 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B07 AHGS2221 SSR 5.4 (cM) Automated name-based, Automated name-based View Maps
AHGS1454 SSR 16.489 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 AHGS1454 SSR 47.43 (cM) Automated name-based, Automated name-based View Maps
Seq5D05_t1 SSR 17.287 No other positions
AHGS1213 SSR 18.109 peanut - BB_A.ipaensis_x_A.magna_b - B07 AHGS1213 SSR 7.4 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB07 AHGS1213 SSR 8.227 (cM) Automated name-based, Automated name-based View Maps
AHGS3747 SSR 19.103 peanut - BB_A.ipaensis_x_A.magna_a - BB09 AHGS3747 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B09 AHGS3747 SSR 33.2 (cM) Automated name-based, Automated name-based View Maps
TC23E04_t1 SSR 19.478 No other positions
AHGS2254 SSR 20.864 peanut - BB_A.ipaensis_x_A.magna_b - B03 AHGS2254 SSR 26.2 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB03 AHGS2254 SSR 4.546 (cM) Automated name-based, Automated name-based View Maps
AHGS2098 SSR 21.519 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 AHGS2098 SSR 56.289 (cM) Automated name-based, Automated name-based View Maps
TC20D05 SSR 22.314 peanut - AA_A.duranensis_x_A.stenosperma_d - A01 TC20D05 SSR 42.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA01 TC20D05 SSR 24.609 (cM) Automated name-based, Automated name-based View Maps
AHGS2577 SSR 23.274 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 AHGS2577 SSR 58.434 (cM) Automated name-based, Automated name-based View Maps
AHGS1912 SSR 26.553 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 AHGS1912 SSR 59.389 (cM) Automated name-based, Automated name-based View Maps
AhTE1021 transposon 26.794 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 AhTE1021 transposon 49.766 (cM) Automated name-based, Automated name-based View Maps
AhTE0478 transposon 27.668 peanut - BB_A.ipaensis_x_A.magna_a - BB07 AhTE0478 transposon 23.839 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B07 AhTE0478 transposon 27.5 (cM) Automated name-based, Automated name-based View Maps
AHGS1538 SSR 28.343 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 AHGS1538 SSR 64.249 (cM) Automated name-based, Automated name-based View Maps
AHGS1296 SSR 29.133 peanut - AA_A.duranensis_x_A.stenosperma_b - AA07 AHGS1296 SSR 4.228 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 AHGS1296 SSR 65.949 (cM) Automated name-based, Automated name-based View Maps
AHGS2709_t3 SSR 29.847 No other positions
AHS1963 SSR 30.464 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 AHS1963 SSR 66.699 (cM) Automated name-based, Automated name-based View Maps
AHGS1127 SSR 31.543 peanut - AA_A.duranensis_x_A.stenosperma_b - AA07 AHGS1127 SSR 5.858 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A07 AHGS1127 SSR 67.504 (cM) Automated name-based, Automated name-based View Maps
AHS1510_t1 SSR 31.854 No other positions
AHGS1980 SSR 33.147 No other positions