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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a
(Reference Set)
Min.
Correspondences
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Maps TB01
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a [ View Map Set Info ]
Map Name: TB01
Map Start: 0 cM
Map Stop: 52.098 cM
Features by Type:
36 SSR
11 transposon
47 Total

Map Features

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Items 1 to 25 of 47.       of 2 | Next
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB01
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Seq16G08 SSR 0 peanut - AA_A.duranensis_x_A.stenosperma_b - AA01 Seq16G08 SSR 8.794 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXV Seq16G08 SSR 31.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B01 seq16G08.B01 SSR 273.39 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXV pPGSSeq16G08 SSR 31.9 (cM) Automated name-based, Automated name-based View Maps
AHGS2715_t2 SSR 28.682 No other positions
AHGS1670 SSR 29.709 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS1670 SSR 51.734 (cM) Automated name-based, Automated name-based View Maps
AhTE0251_t2 transposon 32.088 No other positions
AHGS2148_t2 SSR 32.515 No other positions
AHGS1873 SSR 32.913 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS1873 SSR 35.026 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B01 AHGS1873 SSR 9 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB01 AHGS1873 SSR 0.2 (cM) Automated name-based, Automated name-based View Maps
AHGS2027_t2 SSR 33.376 No other positions
AhTE0121 transposon 33.822 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AhTE0121 transposon 37.587 (cM) Automated name-based, Automated name-based View Maps
Ah3_t2 SSR 34.429 No other positions
AHGS1989 SSR 34.567 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS1989 SSR 49.699 (cM) Automated name-based, Automated name-based View Maps
TC22D09 SSR 34.92 No other positions
Seq17E01 SSR 34.924 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 Seq17E01 SSR 37.994 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhI pPGSSeq17E01 SSR 30.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhI pPGSSeq17E01 SSR 48.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B01 seq17E01 SSR 144.74 (cM) Automated name-based, Automated name-based View Maps
AHGS2374 SSR 35.231 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS2374 SSR 41.358 (cM) Automated name-based, Automated name-based View Maps
AhTE0212 transposon 35.251 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AhTE0212 transposon 40.363 (cM) Automated name-based, Automated name-based View Maps
AhTE0737 transposon 35.251 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AhTE0737 transposon 40.208 (cM) Automated name-based, Automated name-based View Maps
AhTE0985 transposon 35.251 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AhTE0985 transposon 45.649 (cM) Automated name-based, Automated name-based View Maps
AHGS1650 SSR 35.612 peanut - AA_A.duranensis_x_A.stenosperma_b - AA01 AHGS1650 SSR 30.762 (cM) Automated name-based, Automated name-based View Maps
AHGS3627 SSR 35.849 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS3627 SSR 39.967 (cM) Automated name-based, Automated name-based View Maps
AhTE0181 transposon 35.849 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AhTE0181 transposon 39.766 (cM) Automated name-based, Automated name-based View Maps
AHGS1710 SSR 35.855 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS1710 SSR 42.868 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB01 AHGS1710 SSR 12.818 (cM) Automated name-based, Automated name-based View Maps
AHGS1282_t2 SSR 35.87 No other positions
AHGS1273_t2 SSR 35.871 No other positions
AHGS1699 SSR 35.871 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS1699 SSR 34.23 (cM) Automated name-based, Automated name-based View Maps
AHGS1829 SSR 35.871 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS1829 SSR 38.688 (cM) Automated name-based, Automated name-based View Maps
AHGS1860_t2 SSR 35.871 No other positions