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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set peanut-TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a
(Reference Set)
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Maps TB05
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
transposon
Other
 
Show Labels: None Landmarks All
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Features:		 No Yes
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 Correspondence Options
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a [ View Map Set Info ]
Map Name: TB05
Map Start: 0 cM
Map Stop: 67.687 cM
Features by Type:
43 SSR
17 transposon
60 Total

Map Features

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Items 1 to 25 of 60.       of 3 | Next
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB05
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AHGS1946 SSR 0 No other positions
RN34H10 SSR 5.191 peanut - TT_VG9514_x_TAG24_a - A06 RN34H10 SSR 57.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG06 RN34H10 SSR 0.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A06 RN34H10 SSR 134.53 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhVI RN34H10 SSR 42.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVI RN34H10 SSR 42.6 (cM) Automated name-based, Automated name-based View Maps
AhTE0356 transposon 10.626 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AhTE0356 transposon 22.772 (cM) Automated name-based, Automated name-based View Maps
AhTE0119 transposon 12.69 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AhTE0119 transposon 26.686 (cM) Automated name-based, Automated name-based View Maps
AHGS1457 SSR 13.883 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS1457 SSR 24.325 (cM) Automated name-based, Automated name-based View Maps
AHGS2285_t1 SSR 15.733 No other positions
gi446 SSR 17.349 peanut - BB_A.ipaensis_x_A.magna_a - BB05 gi446 SSR 16.649 (cM) Automated name-based, Automated name-based View Maps
Seq19D06 SSR 17.704 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIV pPGSSeq19D06 SSR 20.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 Seq19D06 SSR 44.653 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG03 pPGSSeq19D06 SSR 56.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIV pPGSSeq19D06 SSR 20.7 (cM) Automated name-based, Automated name-based View Maps
AhTE0323 transposon 18.288 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AhTE0323 transposon 38.17 (cM) Automated name-based, Automated name-based View Maps
AhTE0623 transposon 18.624 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AhTE0623 transposon 39.318 (cM) Automated name-based, Automated name-based View Maps
AHGS2602_t3 SSR 18.867 No other positions
AHGS2019_t2 SSR 21.347 No other positions
TC36C03 SSR 21.578 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 TC36C03 SSR 41.572 (cM) Automated name-based, Automated name-based View Maps
AhTE0763 transposon 22.113 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AhTE0763 transposon 35.217 (cM) Automated name-based, Automated name-based View Maps
AHGS1914 SSR 22.484 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS1914 SSR 40.986 (cM) Automated name-based, Automated name-based View Maps
AHGS1188 SSR 22.757 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS1188 SSR 45.607 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB05 AHGS1188 SSR 14.166 (cM) Automated name-based, Automated name-based View Maps
AhTE0940 transposon 22.775 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AhTE0940 transposon 42.56 (cM) Automated name-based, Automated name-based View Maps
AHGS2141 SSR 22.778 peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS2141 SSR 55.9 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB05 AHGS2141 SSR 14.514 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS2141 SSR 45.994 (cM) Automated name-based, Automated name-based View Maps
AHGS2795 SSR 23.34 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS2795 SSR 47.876 (cM) Automated name-based, Automated name-based View Maps
AHGS2605 SSR 23.526 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS2605 SSR 43.151 (cM) Automated name-based, Automated name-based View Maps
AHGS1203 SSR 24.055 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS1203 SSR 48.508 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB05 AHGS1203 SSR 17.867 (cM) Automated name-based, Automated name-based View Maps
PM36_t2 SSR 26.325 No other positions
AhTE0975 transposon 28.262 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AhTE0975 transposon 54.341 (cM) Automated name-based, Automated name-based View Maps
AHGS2509_t2 SSR 28.726 No other positions
AHGS1350_t2 SSR 30.852 No other positions