LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_TAG24_x_GPBD4_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps AhIX
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_TAG24_x_GPBD4_a [ View Map Set Info ]
Map Name: AhIX
Map Start: 0 cM
Map Stop: 127.6 cM
Features by Type:
14 SSR
14 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 14 of 14.
peanut - TT_TAG24_x_GPBD4_a - AhIX
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM1483 SSR 0 peanut - TT_ICGS44_x_ICGS76_a - LG04 GM1483 SSR 51.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIX GM1483 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 GM1483 SSR 46.576 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 GM1483.B10 SSR 155.89 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIX GM1483 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 GM1483.B09 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIV GM1483 SSR 293.37 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - B10 GM1483 SSR 102.2 (cM) Automated name-based, Automated name-based View Maps
GM1979 SSR 21.5 peanut - TT_AhComposite_SujayGowda2012_a - AhIX GM1979 SSR 10.484 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG07 GM1979 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIX GM1979 SSR 7.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII GM1979 SSR 33.01 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 GM1979 SSR 52.84 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 GM1979 SSR 54.475 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 GM1979.B09 SSR 14.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A07 GM1979.A07 SSR 0 (cM) Automated name-based, Automated name-based View Maps
TC2D08 SSR 31.8 peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 TC2D08.B09 SSR 22.34 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhV TC2D08 SSR 9.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG05 TC2D08 SSR 145.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 TC2D08.A05 SSR 150.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIX TC2D08 SSR 14.619 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIX TC2D08 SSR 12.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV TC2D08 SSR 144.4 (cM) Automated name-based, Automated name-based View Maps
GM1603 SSR 43 peanut - TT_AhComposite_SujayGowda2012_a - AhIX GM1603 SSR 19.296 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIX GM1603 SSR 20.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 GM1603 SSR 31.98 (cM) Automated name-based, Automated name-based View Maps
TC5A06 SSR 45.9 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB09 TC5A06 SSR 18.699 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A06 TC5A06 SSR 140.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 TC5A06 SSR 34.08 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX TC5A06 SSR 11.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIX TC5A06 SSR 11.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIX TC5A06 SSR 21.424 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 TC5A06 SSR 70.133 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIX TC5A06 SSR 22.1 (cM) Automated name-based, Automated name-based View Maps
pPGSseq14H06 SSR 51.3 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIX pPGSSeq14H06 SSR 16.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIX pPGSseq14H06 SSR 22.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIX pPGSseq14H06 SSR 24.364 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX pPGSSeq14H06 SSR 16.2 (cM) Automated name-based, Automated name-based View Maps
PM436 SSR 53.4 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 PM436 SSR 60.423 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIX PM436 SSR 26.271 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX PM436 SSR 21.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIX PM436 SSR 21.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 PM436 SSR 46.89 (cM) Automated name-based, Automated name-based View Maps
gi1107 SSR 56.8 peanut - TT_AhComposite_SujayGowda2012_a - AhIX gi1107 SSR 29.334 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX gi1107 SSR 24.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIX gi1107 SSR 24.3 (cM) Automated name-based, Automated name-based View Maps
Lec-1 SSR 56.8 peanut - AA_A.duranensis_x_A.stenosperma_a - A09 Lec-1 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A09 Lec-1 SSR 80.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIX Lec-1 SSR 29.267 (cM) Automated name-based, Automated name-based View Maps
pPGPseq7G02 SSR 65.7 peanut - TT_AhComposite_SujayGowda2012_a - AhIX pPGPseq7G02 SSR 37.836 (cM) Automated name-based, Automated name-based View Maps
GM2120 SSR 74.6 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIX GM2120 SSR 59.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - B09 GM2120 SSR 97.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 GM2120 SSR 90.386 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX GM2120 SSR 59.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 GM2120 SSR 73.06 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIX GM2120 SSR 40.542 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIX GM2120 SSR 35.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 GM2120 SSR 24.689 (cM) Automated name-based, Automated name-based View Maps
GM1893 SSR 91.8 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 GM1893 SSR 50.186 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIX GM1893 SSR 52.18 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 GM1893 SSR 36.636 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 GM1893 SSR 90.06 (cM) Automated name-based, Automated name-based View Maps
pPGSseq17C09 SSR 104.8 peanut - TT_AhComposite_SujayGowda2012_a - AhIX pPGSseq17C09 SSR 61.992 (cM) Automated name-based, Automated name-based View Maps
GM2584 SSR 127.6 peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 GM2584.B09 SSR 125.86 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B04 GM2584.B04 SSR 18.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV GM2584 SSR 3.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIX GM2584 SSR 86.505 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG15 GM2584 SSR 82.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A09 GM2584.A09 SSR 95.52 (cM) Automated name-based, Automated name-based View Maps