LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_TAG24_x_ICGV86031_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG_AhXVIII
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_TAG24_x_ICGV86031_a [ View Map Set Info ]
Map Name: LG_AhXVIII
Map Start: 0 cM
Map Stop: 102.6 cM
Features by Type:
10 SSR
10 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 10 of 10.
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXVIII
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TC7A02 SSR 0 peanut - AA_A.duranensis_x_A.stenosperma_a - A08 TC7A02 SSR 178.7 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B07 TC7A02 SSR 64.8 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB07 TC7A02 SSR 44.754 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A08 TC7A02 SSR 76.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII TC7A02 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A08 TC7A02.A08 SSR 38.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG12 Ah2TC7A02 SSR 23.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA08 TC7A02 SSR 29.976 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 TC7A02.B07 SSR 100.12 (cM) Automated name-based, Automated name-based View Maps
GM624 SSR 14.5 peanut - TT_TAG24_x_GPBD4_a - AhXVIII GM624 SSR 34.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B07 GA24 SSR 87.159 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B07 GM624 SSR 88.42 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXVIII GM624 SSR 16.129 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 GM624 SSR 68.26 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII GM624 SSR 14.5 (cM) Automated name-based, Automated name-based View Maps
pPGSSeq19B12 SSR 19.5 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII pPGSSeq19B12 SSR 19.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B07 Seq19B12 SSR 94.274 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 seq19B12 SSR 64.16 (cM) Automated name-based, Automated name-based View Maps
TC9H09 SSR 23.1 peanut - TT_TAG24_x_GPBD4_a - AhXVIII TC9H09 SSR 36.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B07 TC9H09 SSR 85.579 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 TC9H09 SSR 52.85 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXVIII TC9H09 SSR 18.052 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII TC9H09 SSR 23.1 (cM) Automated name-based, Automated name-based View Maps
pPGSSeq15C10 SSR 33.4 peanut - AA_A.duranensis_x_A.stenosperma_d - A08 Seq15C10 SSR 61.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG2 pPGSseq15C10 SSR 39.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 seq15C10 SSR 49.49 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B07 Seq15C10 SSR 78.747 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII pPGSSeq15C10 SSR 33.4 (cM) Automated name-based, Automated name-based View Maps
GM2744 SSR 55.5 peanut - TT_Tifrunner_x_GT-C20_b - LG2 GM2744 SSR 63.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B07 GM2744 SSR 46.547 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII GM2744 SSR 55.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 GM2744 SSR 32.21 (cM) Automated name-based, Automated name-based View Maps
GM2745 SSR 55.5 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B07 GM2745 SSR 44.711 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 GM2745 SSR 29.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG18 GM2745 SSR 0.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII GM2745 SSR 55.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG2 GM2745 SSR 68 (cM) Automated name-based, Automated name-based View Maps
PM69 SSR 59.8 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII PM69 SSR 59.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 PM69 SSR 29.08 (cM) Automated name-based, Automated name-based View Maps
pPGPSeq5D05 SSR 73.2 peanut - TT_TG26_x_GPBD4_a - AhXVIII pPGPseq5D05 SSR 60 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXVIII pPGPseq5D05 SSR 40.34 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 seq5D05.B07 SSR 25.48 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII pPGPSeq5D05 SSR 73.2 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB07 Seq5D05 SSR 7.782 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXVIII pPGPseq5D05 SSR 62.9 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B07 Seq5D05 SSR 6.9 (cM) Automated name-based, Automated name-based View Maps
GM2156 SSR 102.6 peanut - TT_AhConsensus_GautamiFonceka2012_a - B07 GM2156 SSR 18.43 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG2 GM2156 SSR 87.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 GM2156 SSR 15.454 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVIII GM2156 SSR 102.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B07 GM2156 SSR 28.679 (cM) Automated name-based, Automated name-based View Maps