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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_TG26_x_GPBD4_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps AhIII.B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_TG26_x_GPBD4_a [ View Map Set Info ]
Map Name: AhIII.B
Map Start: 0 cM
Map Stop: 15.1 cM
Features by Type:
2 SSR
2 Total

Map Features

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Items 1 to 2 of 2.
peanut - TT_TG26_x_GPBD4_a - AhIII.B
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AC3D07 SSR 0 peanut - AA_A.duranensis_x_A.stenosperma_a - A05 AC3D07 SSR 163.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIII AC3D07 SSR 94.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A03 AC3D07 SSR 179.47 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG02 Ah2AC3D07 SSR 83.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 AC3D07 SSR 92.873 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIII AC3D07 SSR 34.624 (cM) Automated name-based, Automated name-based View Maps
TC0A01 SSR 15.1 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 TC0A01 SSR 100.948 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A03 TC0A01_2 SSR 81.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A03 TC0A01 SSR 186.22 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG02 Ah1TC0A01 SSR 68.5 (cM) Automated name-based, Automated name-based View Maps