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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-TT_TG26_x_GPBD4_b
(Reference Set)
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Correspondences
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Maps LG04
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
QTL_oil
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_TG26_x_GPBD4_b [ View Map Set Info ]
Map Name: LG04
Map Start: 0 cM
Map Stop: 93.4 cM
Features by Type:
3 QTL_oil
6 SSR
9 Total

Map Features

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Items 1 to 9 of 9.
peanut - TT_TG26_x_GPBD4_b - LG04
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ah1TC1B04 SSR 0 peanut - TT_AhConsensus_GautamiFonceka2012_a - B04 TC1B04 SSR 20 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXVII TC1B04 SSR 152.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXVII TC1B04 SSR 40.295 (cM) Automated name-based, Automated name-based View Maps
Ah1TC2E05 SSR 37.7 peanut - AA_A.duranensis_x_A.stenosperma_d - A01 TC2E05 SSR 5.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 TC2E05.A01 SSR 162.91 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B01 TC2E05.B01 SSR 231.15 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 GM24 SSR 9.333 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A01 TC2E05 SSR 392.9 (cM) Automated name-based, Automated name-based View Maps
Seed oil 2-11 QTL_oil 37.7 - 56.8 No other positions
Seed protein 1-9 QTL_oil 37.7 - 56.8 No other positions
XIP75 SSR 37.7 No other positions
Ah1TC3E02 SSR 56.8 peanut - TT_TG26_x_GPBD4_a - AhXIII TC3E02 SSR 156.5 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B03 TC3E02 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB03 TC3E02 SSR 30.083 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIII TC3E02 SSR 220.39 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A09 TC3E02.A09 SSR 251.62 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 GM32 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXIII TC3E02 SSR 117.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B03 TC3E02.B03 SSR 10.15 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A03 TC3E02 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A03 TC3E02.A03 SSR 76.29 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXIII TC3E02 SSR 73.855 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG13 TC3E02 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIII TC3E02 SSR 232.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A03 TC3E02 SSR 269.2 (cM) Automated name-based, Automated name-based View Maps
IPAHM171c SSR 56.8 peanut - TT_TG26_x_GPBD4_a - AhVI IPAHM171c SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A06 IPAHM171c SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhVI IPAHM171c SSR 5.521 (cM) Automated name-based, Automated name-based View Maps
Seed oleic/linoleic 1-7 QTL_oil 56.8 - 93.4 No other positions
IPAHM352 SSR 93.4 peanut - TT_TG26_x_GPBD4_a - AhIV IPAHM352 SSR 120 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 IPAHM352.B05 SSR 4.31 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A10 IPAHM352.A10 SSR 94.66 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIV IPAHM352 SSR 55.464 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - A10 IPAHM352 SSR 44.2 (cM) Automated name-based, Automated name-based View Maps