LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_Tifrunner_x_GT-C20_b
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG11
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
QTL_fungal
QTL_viral
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_Tifrunner_x_GT-C20_b [ View Map Set Info ]
Map Name: LG11
Map Start: 0 cM
Map Stop: 73.2 cM
Features by Type:
2 QTL_fungal
1 QTL_viral
19 SSR
22 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 22 of 22.
peanut - TT_Tifrunner_x_GT-C20_b - LG11
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
pPGPseq2G4-2 SSR 0 No other positions
pPGPseq2G4-1 SSR 3.7 No other positions
TSWV 2-12 QTL_viral 3.7 - 7.2 No other positions
Late and Early leaf spot 1-27 QTL_fungal 3.7 - 7.2 No other positions
PM499 SSR 7.2 peanut - TT_TG26_x_GPBD4_a - AhII PM499 SSR 15.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B02 PM499 SSR 63.55 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B02 PM499 SSR 135.93 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG02 PM499 SSR 48.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhII PM499 SSR 20.444 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhII PM499 SSR 41.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhII PM499 SSR 48.6 (cM) Automated name-based, Automated name-based View Maps
GNB317-1 SSR 14.3 No other positions
Ah26-1 SSR 17.5 No other positions
GNB218 SSR 22.8 No other positions
AHGS0357 SSR 26.7 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB02 AHGS0357 SSR 25.722 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B02 AHGS0357 SSR 68.002 (cM) Automated name-based, Automated name-based View Maps
GNB580 SSR 28.7 No other positions
Ah2AC2C05 SSR 32 peanut - TT_AhConsensus_GautamiFonceka2012_a - B02 AC2C05 SSR 150.63 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhII AC2C05 SSR 26.97 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhII AC2C05 SSR 24.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B02 AC2C05 SSR 60.982 (cM) Automated name-based, Automated name-based View Maps
Late and Early leaf spot 1-31 QTL_fungal 32 - 34.7 No other positions
GNB1040 SSR 33.4 No other positions
PM200 SSR 34.7 No other positions
pPGPseq1B9 SSR 37.5 peanut - TT_AhConsensus_GautamiFonceka2012_a - A02 seq1B9.A02 SSR 34 (cM) Automated name-based, Automated name-based View Maps
PM402 SSR 39.3 peanut - AA_A.duranensis_x_A.stenosperma_b - AA02 PM402 SSR 15.545 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 PM402 SSR 35.075 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A02 PM402 SSR 38 (cM) Automated name-based, Automated name-based View Maps
Ah26-2 SSR 42.3 No other positions
GNB216 SSR 48.2 No other positions
GM1598 SSR 60.2 peanut - AA_A.duranensis_x_A.duranensis_a - A02 GM1598 SSR 56.186 (cM) Automated name-based, Automated name-based View Maps
PM32 SSR 64.7 peanut - TT_AhConsensus_GautamiFonceka2012_a - A02 PM32.A02 SSR 44.04 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B02 PM32 SSR 37.6 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB02 PM32 SSR 16.767 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A08 PM32 SSR 83.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A02 PM32 SSR 202.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA08 PM32 SSR 38.535 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B02 PM32.B02 SSR 99.7 (cM) Automated name-based, Automated name-based View Maps
PM73 SSR 66.2 peanut - TT_TAG24_x_GPBD4_a - AhII PM73 SSR 11.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhII PM73 SSR 36 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhII PM73 SSR 10.224 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA02 PM73 SSR 18.056 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A02 PM73 SSR 38.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhII PM73 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B02 PM73 SSR 155.23 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhII PM73 SSR 38.17 (cM) Automated name-based, Automated name-based View Maps
PM425 SSR 73.2 No other positions