LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_Tifrunner_x_GT-C20_b
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG13
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_Tifrunner_x_GT-C20_b [ View Map Set Info ]
Map Name: LG13
Map Start: 0 cM
Map Stop: 76.3 cM
Features by Type:
8 SSR
8 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 8 of 8.
peanut - TT_Tifrunner_x_GT-C20_b - LG13
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
IPAHM108-1 SSR 0 No other positions
Ah1TC4H07 SSR 11.3 peanut - TT_TG26_x_GPBD4_b - LG06 Ah1TC4H07 SSR 0 (cM) Automated name-based, Automated name-based View Maps
AHGS0230 SSR 20.5 No other positions
GM2589 SSR 24.4 peanut - TT_AhComposite_SujayGowda2012_a - AhVII GM2589 SSR 14.219 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A04 GM2589.A04 SSR 48.36 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B04 GM2589.B04 SSR 95.88 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhVII GM2589 SSR 27.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 GM2589 SSR 57.976 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhVII GM2589 SSR 20.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXVII GM2589a SSR 20.284 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXVII GM2589 SSR 21.3 (cM) Automated name-based, Automated name-based View Maps
GM1959 SSR 28.3 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVII GM1959 SSR 24.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 GM1959 SSR 59.305 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXVII GM1959 SSR 67.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXVII GM1959 SSR 21.438 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG01 GM1959 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B04 GM1959 SSR 101.34 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04 GM1959 SSR 64.853 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXVII GM1959 SSR 47.2 (cM) Automated name-based, Automated name-based View Maps
AHGS0202 SSR 39.5 No other positions
GM1445 SSR 49.5 peanut - TT_ICGS44_x_ICGS76_a - LG01 GM1445 SSR 19.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B04 GM1445 SSR 44.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXVII GM1445 SSR 29.907 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXVII GM1445 SSR 44.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXVII GM1445 SSR 107.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04 GM1445 SSR 56.563 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXVII GM1445 SSR 56.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 GM1445 SSR 39.708 (cM) Automated name-based, Automated name-based View Maps
AHS2312 SSR 76.3 peanut - TT_VG9514_x_TAG24_a - A04 AHS2312 SSR 97.3 (cM) Automated name-based, Automated name-based View Maps