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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_VG9514_x_TAG24_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A01
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_VG9514_x_TAG24_a [ View Map Set Info ]
Map Name: A01
Map Start: 0 cM
Map Stop: 81 cM
Features by Type:
7 SSR
2 transposon
9 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 9 of 9.
peanut - TT_VG9514_x_TAG24_a - A01
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ah3 SSR 0 peanut - TT_TAG24_x_ICGV86031_a - LG_AhI Ah3 SSR 36 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB01 Ah3 SSR 11.658 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 Ah3 SSR 53.371 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 Ah3 SSR 95.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B01 Ah3 SSR 131.47 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG6 Ah3 SSR 53.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhI Ah3 SSR 53.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A01 Ah3 SSR 8.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG01 Ah3 SSR 150.3 (cM) Automated name-based, Automated name-based View Maps
pPGPseq_8E12 SSR 10.9 No other positions
TE0499 transposon 16 No other positions
TC3H02 SSR 32.7 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 TC3H02 SSR 82.19 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A01 TC3H02 SSR 19.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 GM38 SSR 76.347 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 TC3H02 SSR 62.27 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG6 Ah1TC3H02 SSR 10.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A01 TC3H02 SSR 108.894 (cM) Automated name-based, Automated name-based View Maps
pPGPseq_16F10 SSR 76.9 No other positions
TE0233 transposon 79.5 No other positions
TC2D06 SSR 80.1 peanut - TT_TAG24_x_ICGV86031_a - LG_AhXI TC2D06 SSR 56.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A01 TC2D06 SSR 260.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG11 TC2D06 SSR 65.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXI TC2D06 SSR 75.59 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A01 TC2D06 SSR 78.304 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 TC2D06 SSR 97.46 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 GM22 SSR 50.054 (cM) Automated name-based, Automated name-based View Maps
SSR_FI500754 SSR 80.4 No other positions
ARS731 SSR 81 peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 ARS731 SSR 97.86 (cM) Automated name-based, Automated name-based View Maps