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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_VG9514_x_TAG24_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A02
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
morphological
QTL_insect
SSR
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_VG9514_x_TAG24_a [ View Map Set Info ]
Map Name: A02
Map Start: 0 cM
Map Stop: 225.6 cM
Features by Type:
4 QTL_insect
12 SSR
1 Marker
2 morphological
5 transposon
24 Total

Map Features

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Items 1 to 24 of 24.
peanut - TT_VG9514_x_TAG24_a - A02
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
plhabit morphological 0 No other positions
Groundnut bruchid antibiosis 1-1 QTL_insect 15.5 - 16.5 No other positions
color morphological 15.6 No other positions
S93 SSR 25.6 No other positions
TC1E01 SSR 44.8 peanut - TT_AhConsensus_GautamiFonceka2012_a - B02 TC1E01.B02 SSR 56.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhII TC1E01 SSR 63.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A02 TC1E01_c1 SSR 69.425 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhII TC1E01 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhII TC1E01 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A02 TC1E01.A02 SSR 86.94 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG02 TC1E01 SSR 63.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B02 TC1E01_c2 SSR 77.308 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB02 TC1E01 SSR 21.597 (cM) Automated name-based, Automated name-based View Maps
S89 SSR 56.2 No other positions
TC11D09 SSR 66.2 No other positions
TE0491 transposon 96.9 No other positions
Groundnut bruchid 1-1 QTL_insect 104.8 - 109.2 No other positions
Groundnut bruchid 1-6 QTL_insect 105.7 - 108.3 No other positions
PM179 SSR 106.9 peanut - TT_TAG24_x_ICGV86031_a - LG_AhV PM179 SSR 9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 PM179 SSR 56.307 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV PM179 SSR 143.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 PM179 SSR 95.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV PM179 SSR 23.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhV PM179 SSR 65.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 PM179 SSR 144.95 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 PM179 SSR 57.666 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV PM179 SSR 75.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG19 PM179 SSR 0 (cM) Automated name-based, Automated name-based View Maps
TE0296 transposon 108.4 No other positions
TE0245 transposon 113.9 No other positions
ARS748 SSR 125.7 No other positions
AHBGS21003A02 SSR 178.3 No other positions
gi52221650 SSR 190.2 No other positions
TE0486 transposon 194.5 No other positions
SSR_DX508326 SSR 199.9 No other positions
Groundnut bruchid antibiosis 1-8 QTL_insect 206.8 - 209.4 No other positions
RGC2 Marker 207.8 No other positions
Ah282_b SSR 212.1 No other positions
SSR_GO340073 SSR 213.6 No other positions
Cer2 SSR 214.3 No other positions
TE0465 transposon 225.6 No other positions