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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_VG9514_x_TAG24_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A06
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SSR
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_VG9514_x_TAG24_a [ View Map Set Info ]
Map Name: A06
Map Start: 0 cM
Map Stop: 90.4 cM
Features by Type:
9 SSR
2 transposon
11 Total

Map Features

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Items 1 to 11 of 11.
peanut - TT_VG9514_x_TAG24_a - A06
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TC3H07 SSR 0 peanut - AA_A.duranensis_x_A.stenosperma_b - AA06 TC3H07 SSR 9.157 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG10 Ah1TC3H07 SSR 72.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhX TC3H07 SSR 16.455 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A06 TC3H07 SSR 139.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII TC3H07 SSR 145.31 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B06 TC3H07.B06 SSR 24.56 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 TC3H07_c1 SSR 36.922 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A06 TC3H07 SSR 50.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIX TC3H07 SSR 14.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG17 TC3H07 SSR 83.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhX TC3H07 SSR 89.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B06 TC3H07_c2 SSR 69.897 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhX TC3H07 SSR 81.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A04 TC3H07.A04 SSR 25.8 (cM) Automated name-based, Automated name-based View Maps
TE0295 transposon 7.4 No other positions
IPAHM659 SSR 14.8 peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIX IPAHM659 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A06 IPAHM659 SSR 48.74 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 IPAHM659 SSR 42.607 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII IPAHM659 SSR 130.51 (cM) Automated name-based, Automated name-based View Maps
pPGPseq_5D03 SSR 27.7 No other positions
PM35 SSR 33.9 peanut - BB_A.ipaensis_x_A.magna_a - BB04 PM35 SSR 25.846 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04 PM35_c2 SSR 67.507 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A09 PM35 SSR 126.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B04 PM35.B04 SSR 99.54 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 PM35 SSR 50.662 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A06 PM35.A06 SSR 211.15 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 PM35_c1 SSR 50.987 (cM) Automated name-based, Automated name-based View Maps
TE0372 transposon 42.1 No other positions
GM623 SSR 46.8 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVI GM623 SSR 42.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 GM623 SSR 58.731 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG10 GA21 SSR 15.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A06 GM623 SSR 134.23 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A06 GA21 SSR 143.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhVI GM623 SSR 42.3 (cM) Automated name-based, Automated name-based View Maps
SSR_FI499451 SSR 49 No other positions
RN34H10 SSR 57.2 peanut - TT_ICGS76_x_CSMG84-1_a - LG06 RN34H10 SSR 0.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A06 RN34H10 SSR 134.53 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhVI RN34H10 SSR 42.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVI RN34H10 SSR 42.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB05 RN34H10 SSR 5.191 (cM) Automated name-based, Automated name-based View Maps
TC11A04_b SSR 69.1 peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a - B06 TC11A04_B SSR 77.4 (cM) Automated name-based, Automated name-based View Maps
PM377 SSR 90.4 peanut - TT_Tifrunner_x_GT-C20_b - LG10 PM377 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVI PM377 SSR 25.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A06 PM377 SSR 6.79 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhVI PM377 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06 PM377 SSR 32.947 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhVI PM377 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhVI PM377 SSR 25.5 (cM) Automated name-based, Automated name-based View Maps