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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_VG9514_x_TAG24_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps B03
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_VG9514_x_TAG24_a [ View Map Set Info ]
Map Name: B03
Map Start: 0 cM
Map Stop: 112.9 cM
Features by Type:
10 SSR
5 transposon
15 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 15 of 15.
peanut - TT_VG9514_x_TAG24_a - B03
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
pPGPseq_2H08 SSR 0 No other positions
SSR_GW391728 SSR 22 No other positions
TE0305 transposon 27.1 No other positions
PM3 SSR 30.3 peanut - TT_AhConsensus_GautamiFonceka2012_a - B03 PM3.B03 SSR 156.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B03 PM3_c2 SSR 58.833 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIII PM3 SSR 25.815 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A03 PM3_c1 SSR 99.899 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIII PM3 SSR 97.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIII PM3 SSR 47.18 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A03 PM3 SSR 81.6 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB03 PM3 SSR 20.333 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A03 PM3.A03 SSR 190.43 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A03 PM3 SSR 70.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG03 PM3 SSR 0 (cM) Automated name-based, Automated name-based View Maps
pPGPseq_2C11 SSR 35 No other positions
gi30420088 SSR 40.8 No other positions
RM14E11 SSR 45.5 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B03 RM14E11 SSR 54.998 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIV RM14E11 SSR 58.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B03 RM14E11 SSR 205.08 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIV RM14E11 SSR 58.3 (cM) Automated name-based, Automated name-based View Maps
TE0389 transposon 54.1 No other positions
GM1996 SSR 56.7 peanut - TT_AhConsensus_GautamiFonceka2012_a - B03 GM1996 SSR 204.48 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXV GM1996 SSR 49.692 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG14 GM1996 SSR 36.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIV GM1996 SSR 64.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXV GM1996 SSR 89.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXV GM1996 SSR 165.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B03 GM1996 SSR 63.726 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIV GM1996 SSR 64.1 (cM) Automated name-based, Automated name-based View Maps
TE0459 transposon 65.8 No other positions
TE0249 transposon 79.2 No other positions
GM1733 SSR 90.6 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIV GM1733 SSR 90.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B03 GM1733 SSR 139.92 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B03 GM1733 SSR 31.882 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 GM1733 SSR 39.876 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIV GM1733 SSR 90.7 (cM) Automated name-based, Automated name-based View Maps
TE0002 transposon 93.8 No other positions
AHBGSC1003E10 SSR 100 No other positions
pPGPseq_2B10 SSR 112.9 No other positions