LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-enriched-cDNA
SSR-enriched-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: A2
Map Start: 0 cM
Map Stop: 105.9 cM
Features by Type:
10 EST
5 SSR-enriched-cDNA
10 SSR-enriched-genomic
25 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 25.
white clover - TrZhang2007 - A2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
RCS2806 SSR-enriched-cDNA 0 white clover - TrZhang2007 - B2 RCS2806 SSR-enriched-cDNA 80.91 (cM) Automated name-based View Maps
TRSSRB01C08 SSR-enriched-genomic 1.72 white clover - TrZhang2007 - E2 TRSSRB01C08 SSR-enriched-genomic 45.51 (cM) Automated name-based View Maps
prs426 EST 8.26 white clover - TrZhang2007 - A1 prs426 EST 18.59 (cM) Automated name-based View Maps
BF258 EST 12.12 white clover - TrZhang2007 - A1 BF258 EST 63.32 (cM) Automated name-based View Maps
TRSSRA05A09 SSR-enriched-genomic 19.2 No other positions
TRSSRB02D12 SSR-enriched-genomic 26.4 white clover - TrZhang2007 - G2 TRSSRB02D12 SSR-enriched-genomic 78.63 (cM) Automated name-based View Maps
AI08 EST 28.66 No other positions
RCS4164 EST 32.17 No other positions
ats002 SSR-enriched-genomic 35.75 white clover - TrZhang2007 - A1 ats002 SSR-enriched-genomic 30.33 (cM) Automated name-based View Maps
RCS1632 SSR-enriched-cDNA 39.79 white clover - TrZhang2007 - A1 RCS1632 SSR-enriched-cDNA 9.94 (cM) Automated name-based View Maps
prs510 EST 45.04 No other positions
RCS4104 EST 47.95 white clover - TrZhang2007 - A1 RCS4104 EST 37.02 (cM) Automated name-based View Maps
RCS1336 SSR-enriched-cDNA 52.27 white clover - TrZhang2007 - A1 RCS1336 SSR-enriched-cDNA 80.14 (cM) Automated name-based View Maps
RCS1534 SSR-enriched-cDNA 52.89 white clover - TrZhang2007 - A1 RCS1534 SSR-enriched-cDNA 73.6 (cM) Automated name-based View Maps
BF154 EST 64.08 No other positions
prs461 EST 66.22 white clover - TrZhang2007 - A1 prs461 EST 0 (cM) Automated name-based View Maps
RCS3051 SSR-enriched-cDNA 66.51 white clover - TrZhang2007 - A1 RCS3051 SSR-enriched-cDNA 98.56 (cM) Automated name-based View Maps
TRSSRA02F06 SSR-enriched-genomic 68.03 No other positions
AJ03 EST 71.39 No other positions
BI70 EST 72.7 white clover - TrZhang2007 - D2 BI70 EST 82.93 (cM) Automated name-based View Maps
ats029 SSR-enriched-genomic 78.02 white clover - TrZhang2007 - A1 ats029 SSR-enriched-genomic 74.08 (cM) Automated name-based View Maps
RCS3192 SSR-enriched-genomic 81.08 No other positions
RCS4648 SSR-enriched-genomic 88.72 white clover - TrZhang2007 - F1 RCS4648 SSR-enriched-genomic 18.44 (cM) Automated name-based View Maps
TRSSRA06F11 SSR-enriched-genomic 90 No other positions
TRSSRA03E10 SSR-enriched-genomic 105.9 No other positions