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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
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Maps D2
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-enriched-cDNA
SSR-enriched-genomic
SSR-methyl-filtrated-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: D2
Map Start: 0 cM
Map Stop: 148.79 cM
Features by Type:
6 EST
8 SSR-enriched-cDNA
2 SSR-enriched-genomic
3 SSR-methyl-filtrated-genomic
19 Total

Map Features

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Items 1 to 19 of 19.
white clover - TrZhang2007 - D2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
RCS1587 SSR-enriched-cDNA 0 No other positions
RCS1694 SSR-enriched-cDNA 0.57 No other positions
RCS1866 SSR-enriched-cDNA 11.27 No other positions
ats003 SSR-enriched-genomic 25.64 No other positions
RCS1710 SSR-enriched-cDNA 27.91 No other positions
prs599 EST 43.57 No other positions
RCS3587 SSR-methyl-filtrated-genomic 56.95 white clover - TrZhang2007 - D1 RCS3587 SSR-methyl-filtrated-genomic 11.9 (cM) Automated name-based View Maps
BI103 EST 76.1 white clover - TrZhang2007 - D1 BI103 EST 83.19 (cM) Automated name-based View Maps
RCS1839 SSR-enriched-cDNA 89.7 white clover - TrZhang2007 - D1 RCS1839 SSR-enriched-cDNA 50.93 (cM) Automated name-based View Maps
AL46 EST 99.42 white clover - TrZhang2007 - D1 AL46 EST 57.92 (cM) Automated name-based View Maps
RCS3811 EST 116.42 white clover - TrZhang2007 - D1 RCS3811 EST 71.38 (cM) Automated name-based View Maps
ats113 SSR-enriched-genomic 133 white clover - TrZhang2007 - D1 ats113 SSR-enriched-genomic 37.96 (cM) Automated name-based View Maps
RCS1920 SSR-enriched-cDNA 148.79 No other positions
RCS5901 SSR-methyl-filtrated-genomic 65.19 No other positions
BI70 EST 82.93 white clover - TrZhang2007 - A2 BI70 EST 72.7 (cM) Automated name-based View Maps
RCS1735 SSR-enriched-cDNA 93.25 white clover - TrZhang2007 - D1 RCS1735 SSR-enriched-cDNA 46.79 (cM) Automated name-based View Maps
BG253 EST 101.1 No other positions
RCS3568 SSR-methyl-filtrated-genomic 130.29 white clover - TrZhang2007 - D1 RCS3568 SSR-methyl-filtrated-genomic 87.37 (cM) Automated name-based View Maps
RCS1729 SSR-enriched-cDNA 141.81 white clover - TrZhang2007 - D1 RCS1729 SSR-enriched-cDNA 115.81 (cM) Automated name-based View Maps