LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set cowpea-VuCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps VuLG07
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: cowpea - VuCookUCDavis2009 [ View Map Set Info ]
Map Name: VuLG07
Map Start: 0 cM
Map Stop: 107.7 cM
Features by Type:
51 SNP
51 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 51.       of 3 | Next
cowpea - VuCookUCDavis2009 - VuLG07
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
4_020_TOG896746_2_82 SNP 0 pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG896746_707 SNP 0 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG896746 TOG 15,612,890 - 15,614,642 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_158_TOG896746_1_100 SNP 0.98 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG896746 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG896746 TOG 281,214 - 286,182 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG17 Ah2n_TOG896746_1 SNP 0 (cM) Automated name-based, Automated name-based View Maps
3_338_TOG900957_1_74 SNP 3.98 lotus - LjKazusa200905 - LjChr3 TOG900957 TOG 1,901,236 - 1,903,894 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG900957 SNP 127.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG900957 TOG 43,401,350 - 43,403,970 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG900957 TOG 29,941,904 - 29,946,358 (cM) Automated name-based, Automated name-based View Maps
3_265_TOG898370_1_263 SNP 3.98 chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG898370 SNP 34.3 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG898370 TOG 49,954,337 - 49,959,195 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG898370 TOG 981,054 - 987,709 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG898370_489 SNP 3.9 (cM) Automated name-based, Automated name-based View Maps
3_279_TOG895054_2_300 SNP 5.62 barrel medic - Mt3.0 - MtChr2 TOG895054 TOG 29,611,228 - 29,612,950 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG895054_2 SNP 60.92 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG895054 TOG 16,666,516 - 16,668,100 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP21 SNP 79.804 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG895054 SNP 124.8 (cM) Automated name-based, Automated name-based View Maps
3_109_TOG913106_1_727 SNP 6.92 soybean - GmJGI8x - Gm08 TOG913106 TOG 16,199,730 - 16,200,549 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG913106 TOG 42,772,018 - 42,772,997 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG913106 SNP 4.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG913106 TOG 3,190,171 - 3,191,009 (cM) Automated name-based, Automated name-based View Maps
3_336_TOG915697_1_611 SNP 7.25 peanut - AA_A.duranensis_x_A.stenosperma_d - A07 TOG915697 SNP 37.1 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG915697 SNP 4.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG915697 TOG 28,977,647 - 28,979,883 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG915697 TOG 42,717,738 - 42,721,041 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 SNP200 SNP 32.036 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG915697_588 SNP 5.8 (cM) Automated name-based, Automated name-based View Maps
3_310_TOG899657_2_662 SNP 9.26 common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG899657 SNP 12.5 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG899657 SNP 24.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG899657 TOG 41,705,538 - 41,707,329 (cM) Automated name-based, Automated name-based View Maps
3_366_TOG902578_1_662 SNP 9.26 soybean - GmJGI8x - Gm13 TOG902578 TOG 41,997,737 - 42,003,966 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG902578 SNP 120 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG902578 TOG 27,908,851 - 27,917,047 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG902578 TOG 29,139,436 - 29,140,697 (cM) Automated name-based, Automated name-based View Maps
3_041_TOG895478_1_294 SNP 24.3 soybean - GmJGI8x - Gm12 TOG895478 TOG 36,088,314 - 36,091,601 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG895478_896 SNP 25.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG895478 TOG 23,820,370 - 23,822,734 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG895478 TOG 38,804,834 - 38,807,643 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG895478 TOG 67,226,128 - 67,228,629 (cM) Automated name-based, Automated name-based View Maps
3_036_TOG923519_2_260 SNP 26.95 pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG923519_736 SNP 56 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG923519 TOG 68,896,467 - 68,898,639 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG923519 TOG 38,120,300 - 38,122,537 (cM) Automated name-based, Automated name-based View Maps
3_027_TOG901015_1_615 SNP 28.26 chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG901015 SNP 114.7 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG901015 TOG 37,344,549 - 37,347,041 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG901015 SNP 33.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG901015 TOG 37,989,174 - 37,992,260 (cM) Automated name-based, Automated name-based View Maps
3_212_TOG897017_1_505 SNP 30.23 soybean - GmJGI8x - Gm01 TOG897017 TOG 2,205,158 - 2,206,000 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG897017 SNP 33.4 (cM) Automated name-based, Automated name-based View Maps
4_307_TOG918864_1_1329 SNP 31.54 peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP209 SNP 47.234 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG918864 TOG 37,207,650 - 37,210,344 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A08 TOG918864 SNP 114.1 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG918864_45 SNP 31.9 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG918864 SNP 102.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG918864 TOG 37,859,079 - 37,862,442 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG918864 SNP 33.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG918864 TOG 21,812,832 - 21,816,180 (cM) Automated name-based, Automated name-based View Maps
3_233_TOG895072_2_1197 SNP 33.19 soybean - GmJGI8x - Gm13 TOG895072 TOG 36,937,771 - 36,940,044 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP22 SNP 45.805 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG08 Ah2n_TOG895072_2 SNP 15.35 (cM) Automated name-based, Automated name-based View Maps
3_282_TOG924092_1_296 SNP 40.05 barrel medic - Mt3.0 - MtChr8 TOG924092 TOG 1,294,514 - 1,296,343 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG924092 TOG 44,784,942 - 44,788,013 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG924092 TOG 58,110,946 - 58,113,209 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG924092_114 SNP 38.4 (cM) Automated name-based, Automated name-based View Maps
4_212_TOG896522_1_333 SNP 40.05 soybean - GmJGI8x - Gm08 TOG896522 TOG 45,343,726 - 45,348,151 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG896522 TOG 12,626,856 - 12,635,976 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG896522_1889 SNP 38.4 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG896522 TOG 35,157,931 - 35,163,233 (cM) Automated name-based, Automated name-based View Maps
4_057_TOG907901_2_274 SNP 40.7 common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG907901 SNP 36.8 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG907901_201 SNP 39.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG907901 TOG 45,818,681 - 45,820,357 (cM) Automated name-based, Automated name-based View Maps
4_175_TOG907901_2_199 SNP 40.7 common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG907901 SNP 36.8 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG907901_201 SNP 39.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG907901 TOG 45,818,681 - 45,820,357 (cM) Automated name-based, Automated name-based View Maps
4_203_TOG946804_1_338 SNP 43.37 chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG946804 SNP 19.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG946804 TOG 3,538,654 - 3,540,762 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP231 SNP 35.369 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG946804 TOG 80,891,672 - 80,894,467 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG946804_328 SNP 14 (cM) Automated name-based, Automated name-based View Maps
3_092_TOG906662_2_469 SNP 47.41 barrel medic - Mt3.0 - MtChr1 TOG906662 TOG 807,797 - 809,976 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG906662_427 SNP 55.5 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG906662 TOG 2,174,052 - 2,176,648 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG906662 SNP 39.2 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG906662 SNP 85.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG906662 TOG 28,667,356 - 28,670,435 (cM) Automated name-based, Automated name-based View Maps
4_348_TOG897707_1_1160 SNP 50.73 soybean - GmJGI8x - Gm16 TOG897707 TOG 21,300,771 - 21,326,818 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG897707 SNP 39.2 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG897707 TOG 37,493,833 - 37,497,088 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG897707 TOG 18,408,572 - 18,413,639 (cM) Automated name-based, Automated name-based View Maps
4_374_TOG897707_1_1604 SNP 50.73 soybean - GmJGI8x - Gm16 TOG897707 TOG 21,300,771 - 21,326,818 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG897707 SNP 39.2 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG897707 TOG 37,493,833 - 37,497,088 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG897707 TOG 18,408,572 - 18,413,639 (cM) Automated name-based, Automated name-based View Maps
4_371_TOG948168_2_117 SNP 51.47 soybean - GmJGI8x - Gm07 TOG948168 TOG 1,328,457 - 1,331,330 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG948168 TOG 2,723,676 - 2,751,918 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG948168 SNP 19.1 (cM) Automated name-based, Automated name-based View Maps
3_369_TOG898309_2_327 SNP 56.4 soybean - GmJGI8x - Gm09 TOG898309 TOG 46,190,970 - 46,193,728 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG898309 TOG 16,449,525 - 16,452,656 (cM) Automated name-based, Automated name-based View Maps
3_039_TOG901166_1_687 SNP 58.37 soybean - GmJGI8x - Gm18 TOG901166 TOG 54,475,055 - 54,480,208 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG901166 SNP 42.4 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG901166_1050 SNP 55 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG901166 TOG 34,076,400 - 34,077,416 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG18 Ah2n_TOG901166_1 SNP 5.11 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TOG901166 SNP 33.4 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG901166_641 SNP 55 (cM) Automated name-based, Automated name-based View Maps