LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set cowpea-VuCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps VuLG11
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: cowpea - VuCookUCDavis2009 [ View Map Set Info ]
Map Name: VuLG11
Map Start: 0 cM
Map Stop: 66.33 cM
Features by Type:
56 SNP
56 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 56.       of 3 | Next
cowpea - VuCookUCDavis2009 - VuLG11
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
3_247_TOG897188_1_353 SNP 0 pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG897188_600 SNP 32.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG897188 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG897188 TOG 21,263,774 - 21,277,429 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG897188_536 SNP 32.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP71 SNP 91.01 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG897188 TOG 12,912,504 - 12,915,557 (cM) Automated name-based, Automated name-based View Maps
3_102_TOG902462_2_196 SNP 0 chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG902462 SNP 57.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG902462 TOG 12,400,735 - 12,410,641 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG902462 TOG 27,331,823 - 27,336,270 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG902462_158 SNP 0 (cM) Automated name-based, Automated name-based View Maps
3_193_TOG905215_1_154 SNP 0 lotus - LjKazusa200905 - LjChr0 TOG905215 TOG 33,458,330 - 33,470,259 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG905215_297 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG905215 TOG 22,172,744 - 22,178,142 (cM) Automated name-based, Automated name-based View Maps
3_236_TOG911890_1_309 SNP 0 lotus - LjKazusa200905 - LjChr0 TOG911890 TOG 33,458,330 - 33,470,259 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG911890 TOG 22,172,744 - 22,178,142 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG911890 SNP 0 (cM) Automated name-based, Automated name-based View Maps
4_143_TOG900268_1_668 SNP 0.33 pigeonpea - CcCookUCDavis2009 - CcLG06 Cc_TOG900268_229 SNP 5.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG900268 TOG 14,644,759 - 14,648,259 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG900268 TOG 6,623,162 - 6,629,343 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG900268 TOG 41,421,549 - 41,425,058 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG900268 SNP 3.2 (cM) Automated name-based, Automated name-based View Maps
4_037_TOG900268_1_570 SNP 0.33 pigeonpea - CcCookUCDavis2009 - CcLG06 Cc_TOG900268_229 SNP 5.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG900268 TOG 14,644,759 - 14,648,259 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG900268 TOG 6,623,162 - 6,629,343 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG900268 TOG 41,421,549 - 41,425,058 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG900268 SNP 3.2 (cM) Automated name-based, Automated name-based View Maps
3_278_TOG897513_2_281 SNP 0.33 chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG897513 SNP 21.1 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG897513 SNP 3.2 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG06 Cc_TOG897513_434 SNP 5.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG07 Ah2n_TOG897513_1 SNP 13.64 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG897513 TOG 14,501,661 - 14,503,243 (cM) Automated name-based, Automated name-based View Maps
4_213_TOG895876_2_555 SNP 0.65 soybean - GmJGI8x - Gm02 TOG895876 TOG 26,033,227 - 26,037,813 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG895876 SNP 38.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG895876 TOG 10,898,744 - 10,901,254 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG895876 TOG 14,522,278 - 14,526,714 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG06 Cc_TOG895876_95 SNP 9.3 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG895876 SNP 4 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895876 TOG 37,269,626 - 37,274,116 (cM) Automated name-based, Automated name-based View Maps
3_169_TOG896745_1_234 SNP 4.64 common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG896745 SNP 8.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896745 TOG 18,993,949 - 18,999,059 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG896745 TOG 7,130,383 - 7,133,710 (cM) Automated name-based, Automated name-based View Maps
3_259_TOG902870_1_113 SNP 5.29 soybean - GmJGI8x - Gm08 TOG902870 TOG 44,420,710 - 44,424,389 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG902870 TOG 6,698,625 - 6,702,506 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG902870 SNP 11.3 (cM) Automated name-based, Automated name-based View Maps
3_164_TOG897198_2_1232 SNP 5.29 soybean - GmJGI8x - Gm14 TOG897198 TOG 831,038 - 835,915 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG897198 TOG 41,812,979 - 41,817,088 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG897198 SNP 10.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG897198 TOG 18,843,227 - 18,849,061 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG897198 TOG 6,956,387 - 6,961,966 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG897198 SNP 37.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG897198 TOG 44,704,970 - 44,707,634 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG897198 TOG 78,375,423 - 78,379,551 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG06 Cc_TOG897198_414 SNP 16 (cM) Automated name-based, Automated name-based View Maps
3_205_TOG897646_2_116 SNP 8.61 soybean - GmJGI8x - Gm11 TOG897646 TOG 26,549,647 - 26,551,929 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG897646 SNP 12.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP78 SNP 28.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG03 Ah2n_TOG897646_1 SNP 90.73 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A01 TOG897646 SNP 22.7 (cM) Automated name-based, Automated name-based View Maps
3_136_TOG896306_2_538 SNP 9.26 soybean - GmJGI8x - Gm18 TOG896306 TOG 5,430,748 - 5,439,482 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG896306 SNP 12.9 (cM) Automated name-based, Automated name-based View Maps
4_103_TOG906318_1_326 SNP 14.99 peanut - AA_A.duranensis_x_A.stenosperma_e - LG07 Ah2n_TOG906318_1 SNP 38.18 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG906318 TOG 3,867,744 - 3,873,453 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG906318_45 SNP 21 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG906318 SNP 20.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG906318 TOG 32,172,888 - 32,178,308 (cM) Automated name-based, Automated name-based View Maps
4_202_TOG910860_1_558 SNP 15.64 pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG910860_692 SNP 99 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG910860 TOG 48,128,049 - 48,131,022 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG910860 SNP 70.6 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG910860_773 SNP 99 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG910860 SNP 22.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG910860 TOG 45,510,780 - 45,512,032 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG910860 TOG 32,962,990 - 32,965,432 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG09 Ah2n_TOG910860_1 SNP 20.79 (cM) Automated name-based, Automated name-based View Maps
3_342_TOG910208_1_213 SNP 15.64 barrel medic - Mt3.0 - MtChr7 TOG910208 TOG 32,957,196 - 32,959,616 (cM) Automated name-based, Automated name-based View Maps
3_364_TOG898887_1_424 SNP 17.28 barrel medic - Mt3.0 - MtChr1 TOG898887 TOG 20,138,107 - 20,145,501 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG898887 TOG 38,562,308 - 38,572,891 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP92 SNP 55.947 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG898887 TOG 45,889,797 - 45,896,355 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG898887 SNP 33.1 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG898887 TOG 31,554,899 - 31,567,119 (cM) Automated name-based, Automated name-based View Maps
3_044_TOG901729_1_252 SNP 23.01 chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG901729 SNP 30.3 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG901729 TOG 27,179,353 - 27,184,713 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG901729 TOG 18,939,614 - 18,945,812 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG901729_1 SNP 66.94 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG901729 TOG 46,760,629 - 46,767,209 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG901729_118 SNP 105.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP131 SNP 19.385 (cM) Automated name-based, Automated name-based View Maps
4_209_TOG902798_1_1111 SNP 26.33 common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG902798 SNP 32.3 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG902798 TOG 86,692,939 - 86,699,257 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG902798_70 SNP 109.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG902798 TOG 34,761,954 - 34,764,323 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG902798 SNP 90.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG902798 TOG 47,365,616 - 47,366,914 (cM) Automated name-based, Automated name-based View Maps
4_165_TOG894869_1_388 SNP 26.66 pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG894869_570 SNP 63.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG894869 TOG 10,511,054 - 10,517,030 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894869 TOG 11,311,264 - 11,317,373 (cM) Automated name-based, Automated name-based View Maps
4_342_TOG895389_1_143 SNP 26.66 barrel medic - Mt3.0 - MtChr2 TOG895389 TOG 10,511,054 - 10,517,030 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG895389 TOG 11,311,264 - 11,317,373 (cM) Automated name-based, Automated name-based View Maps
4_068_TOG894869_1_97 SNP 26.66 pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG894869_570 SNP 63.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG894869 TOG 10,511,054 - 10,517,030 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894869 TOG 11,311,264 - 11,317,373 (cM) Automated name-based, Automated name-based View Maps
4_169_TOG897333_1_100 SNP 29.97 soybean - GmJGI8x - Gm15 TOG897333 TOG 10,304,884 - 10,306,353 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG897333 TOG 31,406,542 - 31,410,771 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG897333_757 SNP 63.3 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG897333 SNP 71.2 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG897333 SNP 36.5 (cM) Automated name-based, Automated name-based View Maps
3_179_TOG902569_1_447 SNP 31.96 chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG902569 SNP 70 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG902569 TOG 9,992,409 - 9,995,586 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG902569 TOG 1,679,677 - 1,682,440 (cM) Automated name-based, Automated name-based View Maps
4_306_TOG897347_1_411 SNP 33.28 common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG897347 SNP 37.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG897347_293 SNP 64.5 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG897347 SNP 68 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG897347 TOG 1,351,833 - 1,355,678 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG897347 TOG 9,106,457 - 9,110,507 (cM) Automated name-based, Automated name-based View Maps