LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set cowpea-VuCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps VuLG02
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: cowpea - VuCookUCDavis2009 [ View Map Set Info ]
Map Name: VuLG02
Map Start: 0 cM
Map Stop: 57.45 cM
Features by Type:
31 SNP
31 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 31.       of 2 | Next
cowpea - VuCookUCDavis2009 - VuLG02
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
3_379_TOG897466_1_640 SNP 0 pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG897466_395 SNP 0 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG897466 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG897466 TOG 18,253,140 - 18,256,915 (cM) Automated name-based, Automated name-based View Maps
3_113_TOG908625_1_236 SNP 0 chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG908625 SNP 0 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG908625 TOG 41,361,940 - 41,371,806 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG908625 TOG 18,404,335 - 18,411,826 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG908625 TOG 46,686,382 - 46,695,932 (cM) Automated name-based, Automated name-based View Maps
4_158_TOG896746_1_100 SNP 0.98 pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG896746_707 SNP 0 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG896746 TOG 15,612,890 - 15,614,642 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG896746 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG896746 TOG 281,214 - 286,182 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 4_020_TOG896746_2_82 SNP 0 (cM) Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG17 Ah2n_TOG896746_1 SNP 0 (cM) Automated name-based, Automated name-based View Maps
3_144_TOG947627_1_330 SNP 6.35 common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG947627 SNP 9.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG947627 TOG 30,375,370 - 30,379,838 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG947627 SNP 128.4 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG947627_108 SNP 7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG947627 TOG 43,573,259 - 43,576,421 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG17 Ah2n_TOG947627_1 SNP 6.92 (cM) Automated name-based, Automated name-based View Maps
3_273_TOG898359_1_188 SNP 6.35 pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG898359_255 SNP 6.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG898359 TOG 2,459,415 - 2,462,344 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG898359 TOG 30,580,020 - 30,584,511 (cM) Automated name-based, Automated name-based View Maps
3_361_TOG898468_1_570 SNP 6.35 pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG898468_959 SNP 7 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG898468_473 SNP 7 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG898468 SNP 9.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG898468 TOG 43,573,259 - 43,576,421 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG898468 TOG 30,375,370 - 30,379,838 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG898468 SNP 128.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG898468 TOG 17,061,576 - 17,063,994 (cM) Automated name-based, Automated name-based View Maps
3_056_TOG901770_2_171 SNP 7.99 pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG901770_536 SNP 9.6 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG901770 TOG 2,587,477 - 2,590,996 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG901770 TOG 16,556,757 - 16,561,025 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG901770 SNP 17.5 (cM) Automated name-based, Automated name-based View Maps
3_344_TOG902834_1_66 SNP 7.99 common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG902834 SNP 17.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG902834 TOG 16,598,855 - 16,600,955 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG902834 SNP 34.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG902834_914 SNP 9.6 (cM) Automated name-based, Automated name-based View Maps
3_035_TOG963072_2_229 SNP 11.3 barrel medic - Mt3.0 - MtChr8 TOG963072 TOG 3,085,320 - 3,088,769 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG963072 TOG 16,221,439 - 16,226,949 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG963072_292 SNP 10.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG963072 TOG 1,120,852 - 1,133,961 (cM) Automated name-based, Automated name-based View Maps
3_130_TOG894056_2_322 SNP 13.27 barrel medic - Mt3.0 - MtChr2 TOG894056 TOG 28,903,525 - 28,911,514 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG894056 TOG 42,668,125 - 42,676,300 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG894056 SNP 19.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894056 TOG 1,787,909 - 1,793,148 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894056 TOG 8,783,396 - 8,794,894 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG894056 TOG 920,783 - 928,567 (cM) Automated name-based, Automated name-based View Maps
3_159_TOG900848_1_191 SNP 15.24 common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG900848 SNP 22.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP124 SNP 70.27 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG900848_76 SNP 16.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG900848 TOG 3,703,369 - 3,705,368 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG900848 TOG 580,341 - 583,797 (cM) Automated name-based, Automated name-based View Maps
4_160_TOG903872_1_270 SNP 16.55 soybean - GmJGI8x - Gm16 TOG903872 TOG 600,255 - 603,499 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP150 SNP 60.409 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG903872 TOG 4,688,423 - 4,691,928 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG903872_1 SNP 45.06 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG903872 TOG 3,114,886 - 3,117,826 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG903872 SNP 24.8 (cM) Automated name-based, Automated name-based View Maps
4_122_TOG894060_2_377 SNP 22.96 soybean - GmJGI8x - Gm16 TOG894060 TOG 1,351,632 - 1,355,453 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894060 TOG 6,010,545 - 6,012,502 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894060_142 SNP 109.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG894060 TOG 47,617,917 - 47,620,062 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG894060 TOG 26,552,691 - 26,556,977 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG894060 SNP 30 (cM) Automated name-based, Automated name-based View Maps
3_199_TOG895704_1_653 SNP 24.93 peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP30 SNP 59.749 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG895704 TOG 1,837,265 - 1,840,800 (cM) Automated name-based, Automated name-based View Maps
3_021_TOG910212_2_521 SNP 28.58 soybean - GmJGI8x - Gm07 TOG910212 TOG 4,846,669 - 4,848,500 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG910212_493 SNP 33 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG910212 SNP 39.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP184 SNP 17.833 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG910212 TOG 2,326,334 - 2,328,840 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG910212_506 SNP 33 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG910212 SNP 152.1 (cM) Automated name-based, Automated name-based View Maps
4_200_TOG902069_2_897 SNP 29.89 common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG902069 SNP 41 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG902069 TOG 2,467,701 - 2,472,764 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG902069_1555 SNP 36.3 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG902069 SNP 152.1 (cM) Automated name-based, Automated name-based View Maps
3_299_TOG905494_1_1055 SNP 34.21 common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG905494 SNP 44.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG905494 TOG 6,035,928 - 6,039,021 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG905494_668 SNP 95.2 (cM) Automated name-based, Automated name-based View Maps
4_056_TOG906955_2_702 SNP 38.2 pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG906955_612 SNP 94 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP177 SNP 63.728 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG10 Ah2n_TOG906955_2 SNP 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A02 TOG906955 SNP 35.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG906955 TOG 6,768,135 - 6,773,089 (cM) Automated name-based, Automated name-based View Maps
4_179_TOG895021_1_250 SNP 38.85 pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG895021_411 SNP 93.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG10 Ah2n_TOG895021_1 SNP 0.65 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG895021_160 SNP 93.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG895021 TOG 6,988,174 - 6,993,698 (cM) Automated name-based, Automated name-based View Maps
4_058_TOG895021_1_720 SNP 38.85 pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG895021_411 SNP 93.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG10 Ah2n_TOG895021_1 SNP 0.65 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG895021_160 SNP 93.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG895021 TOG 6,988,174 - 6,993,698 (cM) Automated name-based, Automated name-based View Maps
4_161_TOG906490_2_180 SNP 40.84 peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TOG906490 SNP 34.1 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG906490 TOG 35,234,198 - 35,235,198 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG906490 TOG 17,784,551 - 17,785,518 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG906490 TOG 7,446,031 - 7,447,046 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 SNP172 SNP 66.961 (cM) Automated name-based, Automated name-based View Maps
3_380_TOG906850_1_610 SNP 43.16 soybean - GmJGI8x - Gm03 TOG906850 TOG 2,525,170 - 2,528,365 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG906850 TOG 5,716,240 - 5,719,459 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG906850 TOG 29,237,686 - 29,239,955 (cM) Automated name-based, Automated name-based View Maps
3_002_TOG960856_1_484 SNP 49.22 pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG960856_400 SNP 50.5 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG960856 SNP 17.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG960856 TOG 15,392,472 - 15,395,349 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG960856_167 SNP 50.5 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG960856 SNP 40 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG960856 TOG 53,224,266 - 53,227,233 (cM) Automated name-based, Automated name-based View Maps
4_011_TOG916154_1_272 SNP 52.87 soybean - GmJGI8x - Gm03 TOG916154 TOG 22,138,288 - 22,140,491 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG916154_1025 SNP 69.6 (cM) Automated name-based, Automated name-based View Maps
4_116_TOG916154_1_607 SNP 52.87 soybean - GmJGI8x - Gm03 TOG916154 TOG 22,138,288 - 22,140,491 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG916154_1025 SNP 69.6 (cM) Automated name-based, Automated name-based View Maps