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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-AhCookUCDavisRGHHyb2
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps FPC_Contig0
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Clone
fpc_marker
GenomicClone_ActiveFinishing
GenomicClone_Finished
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AhCookUCDavisRGHHyb2 [ View Map Set Info ]
Map Name: FPC_Contig0
Map Start: 0 cM
Map Stop: 25,542 cM
Features by Type:
124 Clone
39 GenomicClone_ActiveFinishing
171 GenomicClone_Finished
13 SSR
19 fpc_marker
366 Total

Map Features

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Items 1 to 25 of 366.       of 15 | Next
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig0
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AR008C22 Clone 14,338 - 14,423 No other positions
AR003K23 GenomicClone_Finished 5,955 - 6,064 No other positions
AR003G03 GenomicClone_Finished 5,512 - 5,606 No other positions
AR011J04 Clone 24,110 - 24,188 No other positions
AR002I11 Clone 3,984 - 4,083 No other positions
AR002N06 GenomicClone_Finished 4,598 - 4,691 No other positions
AR001E12 Clone 1,011 - 1,068 No other positions
AR001J19 GenomicClone_ActiveFinishing 1,702 - 1,805 No other positions
AR010E16 Clone 19,831 - 19,900 No other positions
AR009C04 GenomicClone_Finished 16,133 - 16,198 No other positions
AR011F08 Clone 23,466 - 23,527 No other positions
AR001I03 GenomicClone_Finished 1,474 - 1,527 No other positions
AR004J20 Clone 8,073 - 8,140 No other positions
AR010F19 Clone 20,300 - 20,354 No other positions
AR002A01 GenomicClone_Finished 2,630 - 2,705 No other positions
AR003J20 Clone 5,796 - 5,857 No other positions
AR009G14 GenomicClone_Finished 16,709 - 16,764 No other positions
AR010M20 Clone 21,604 - 21,672 No other positions
AR005N12 Clone 10,707 - 10,783 No other positions
AR010D02 GenomicClone_Finished 19,021 - 19,104 No other positions
AR001L07 GenomicClone_Finished 1,875 - 1,963 No other positions
AR004J12 Clone 8,026 - 8,073 No other positions
AR003L14 Clone 6,112 - 6,151 No other positions
AR009N15 Clone 17,646 - 17,701 No other positions
AR007N02 GenomicClone_ActiveFinishing 13,757 - 13,818 No other positions