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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-AhCookUCDavisRGHHyb2
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps FPC_Contig113
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
fpc_marker
GenomicClone_Finished
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AhCookUCDavisRGHHyb2 [ View Map Set Info ]
Map Name: FPC_Contig113
Map Start: 0 cM
Map Stop: 111 cM
Features by Type:
7 GenomicClone_Finished
2 SSR
1 fpc_marker
10 Total

Map Features

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Items 1 to 10 of 10.
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig113
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AR001E10 GenomicClone_Finished 27 - 108 No other positions
AR001E10_ssr SSR 67.5 No other positions
AR002G19 GenomicClone_Finished 65 - 111 No other positions
AR003I09 GenomicClone_Finished 74 - 110 No other positions
AR005I15 GenomicClone_Finished 0 - 70 No other positions
AR002F09 GenomicClone_Finished 10 - 48 No other positions
AR005G12 GenomicClone_Finished 29 - 102 No other positions
AR005G12_ssr SSR 65.5 No other positions
AR004F01 GenomicClone_Finished 27 - 102 No other positions
set6 fpc_marker 92 peanut - AhCookUCDavisRGHHyb2 - FPC_Contig278 set6 fpc_marker 69 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig189 set6 fpc_marker 79 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig146 set6 fpc_marker 52 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig165 set6 fpc_marker 72 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig483 set6 fpc_marker 30 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig34 set6 fpc_marker 417 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig258 set6 fpc_marker 106 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig153 set6 fpc_marker 273 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig65 set6 fpc_marker 432 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig227 set6 fpc_marker 79 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig147 set6 fpc_marker 54 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig244 set6 fpc_marker 31 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig12 set6 fpc_marker 80 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig170 set6 fpc_marker 110 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig2 set6 fpc_marker 217 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig161 set6 fpc_marker 45 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig206 set6 fpc_marker 57 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig412 set6 fpc_marker 63 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig447 set6 fpc_marker 381 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig59 set6 fpc_marker 482 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig0 set6 fpc_marker 10,205 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig44 set6 fpc_marker 378 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig463 set6 fpc_marker 70 (cM) Automated name-based View Maps
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig592 set6 fpc_marker 198 (cM) Automated name-based View Maps