LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set chickpea-CaCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CaChr3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: chickpea - CaCookUCDavis2009 [ View Map Set Info ]
Map Name: CaChr3
Map Start: 0 cM
Map Stop: 152.1 cM
Features by Type:
73 SNP
73 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 73.       of 3 | Next
chickpea - CaCookUCDavis2009 - CaChr3
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ca_TOG896852 SNP 152.1 soybean - GmJGI8x - Gm07 TOG896852 TOG 4,846,669 - 4,848,500 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG896852 TOG 2,326,334 - 2,328,840 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG896852 SNP 39.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP61 SNP 17.117 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG896852 TOG 47,211,670 - 47,212,593 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG910212 SNP 152.1 pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG910212_506 SNP 33 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG910212_493 SNP 33 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_021_TOG910212_2_521 SNP 28.58 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG910212 SNP 39.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG910212 TOG 2,326,334 - 2,328,840 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP184 SNP 17.833 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG910212 TOG 4,846,669 - 4,848,500 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG902069 SNP 152.1 common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG902069 SNP 41 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG902069_1555 SNP 36.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_200_TOG902069_2_897 SNP 29.89 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG902069 TOG 2,467,701 - 2,472,764 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG913042 SNP 142.1 pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG913042_312 SNP 3.2 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG913042 SNP 66.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG19 Ah2n_TOG913042_1 SNP 51.25 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG913042 TOG 1,129,397 - 1,131,410 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG913042 TOG 42,010,866 - 42,017,207 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG913042_367 SNP 3.2 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG913042 TOG 52,785,937 - 52,809,011 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG894880 SNP 127.3 peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP18 SNP 56.569 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894880 TOG 42,055,909 - 42,059,865 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894880 TOG 53,561,143 - 53,564,019 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG894880 TOG 1,169,817 - 1,172,962 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894880_514 SNP 4.5 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894880_697 SNP 4.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG894880 TOG 1,166,797 - 1,169,240 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG894880 SNP 66.1 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG901215 SNP 123.5 soybean - GmJGI8x - Gm11 TOG901215 TOG 36,843,758 - 36,845,810 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG901215 TOG 22,185,021 - 22,186,965 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG901215 SNP 18.8 (cM) Automated name-based, Automated name-based View Maps
Ca14402150174189_116 SNP 123.5 No other positions
Ca_TOG895760 SNP 122.7 peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP31 SNP 39.876 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG895760 TOG 600,256 - 602,928 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG895760 TOG 577,776 - 580,426 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG895760_1 SNP 26.45 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG895760 SNP 66.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG895760 TOG 42,806,445 - 42,810,866 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG895760_653 SNP 0 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG895760_205 SNP 0 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903079 SNP 119.4 soybean - GmJGI8x - Gm06 TOG903079 TOG 1,188,896 - 1,192,427 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG903079 TOG 42,075,608 - 42,078,733 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG905363 SNP 118.6 peanut - AA_A.duranensis_x_A.stenosperma_d - A08 TOG905363 SNP 45.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP166 SNP 54.076 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG905363 TOG 1,468,395 - 1,470,253 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG19 Ah2n_TOG905363_1 SNP 54.11 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG905363 SNP 64.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG905363 TOG 1,467,437 - 1,470,734 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG916130 SNP 117.8 pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG916130_148 SNP 9.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG916130 TOG 40,915,350 - 40,917,515 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG916130 TOG 1,870,397 - 1,873,112 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG918373 SNP 116.2 pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG918373_520 SNP 10.8 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG918373 SNP 58.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG918373 TOG 2,301,159 - 2,303,891 (cM) Automated name-based, Automated name-based View Maps
LG103_138 SNP 113.3 No other positions
Ca_TOG908250 SNP 113.3 soybean - GmJGI8x - Gm06 TOG908250 TOG 6,647,366 - 6,651,066 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG908250_150 SNP 57.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG908250 TOG 33,149,916 - 33,153,025 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG908250 SNP 45.2 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG900269 SNP 113.3 pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG900269_348 SNP 57.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG900269 TOG 32,650,912 - 32,654,783 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG900269 TOG 7,486,059 - 7,490,272 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG900269 TOG 27,289,831 - 27,349,238 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG900269 TOG 6,984,159 - 6,988,380 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG899751 SNP 113.3 common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG899751 SNP 44.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG899751 TOG 32,672,074 - 32,675,227 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG899751_307 SNP 57.2 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG899751 TOG 27,276,093 - 27,278,513 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_223_TOG899751_1_379 SNP 50.31 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG899751_215 SNP 57.2 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_016_TOG899751_1_190 SNP 50.31 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG899751 TOG 6,928,874 - 6,932,245 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP116 SNP 64.94 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895900 SNP 110 soybean - GmJGI8x - Gm04 TOG895900 TOG 6,747,472 - 6,751,423 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_320_TOG895900_1_189 SNP 52.94 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG895900 SNP 46.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_263_TOG895900_1_393 SNP 52.94 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG904656 SNP 110 soybean - GmJGI8x - Gm06 TOG904656 TOG 6,172,833 - 6,176,336 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG904656 SNP 48.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG904656 TOG 33,466,002 - 33,469,954 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG904656 TOG 24,654,050 - 24,657,708 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG896702 SNP 110 pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG896702_488 SNP 59.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_071_TOG896702_1_1223 SNP 53.26 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG896702 TOG 6,172,833 - 6,176,336 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG896702_536 SNP 59.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A10 TOG896702 SNP 46.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG896702 SNP 48.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG16 Ah2n_TOG896702_2 SNP 8.18 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG896702 TOG 24,654,050 - 24,657,708 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG896702 TOG 33,466,002 - 33,469,954 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_022_TOG896702_1_847 SNP 53.26 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A10 SNP57 SNP 53.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG16 Ah2n_TOG896702_1 SNP 0 (cM) Automated name-based, Automated name-based View Maps
Gm2091985_43 SNP 110 No other positions
Ca_TOG894358 SNP 110 pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894358_200 SNP 59.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG894358 TOG 6,687,137 - 6,688,462 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG894358 TOG 6,312,041 - 6,313,482 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG894965 SNP 108 pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894965_180 SNP 61.1 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG894965 SNP 50.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG894965_2 SNP 32.74 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894965 TOG 34,570,068 - 34,575,037 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894965 TOG 23,358,946 - 23,363,433 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG894965 TOG 5,620,091 - 5,623,329 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG899600 SNP 103.7 soybean - GmJGI8x - Gm06 TOG899600 TOG 4,214,258 - 4,216,112 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG899600 TOG 21,630,884 - 21,634,466 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG899600 TOG 35,752,738 - 35,756,575 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG899600 SNP 55.7 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_202_TOG899600_1_1393 SNP 58.82 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG896050 SNP 103.3 soybean - GmJGI8x - Gm06 TOG896050 TOG 3,845,297 - 3,849,699 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP39 SNP 26.88 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG896050 TOG 8,871,116 - 8,876,270 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 4_214_TOG896050_1_577 SNP 60.79 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896050 TOG 4,692,391 - 4,697,994 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG896050_361 SNP 65.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG896050_1 SNP 58.72 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG896050 SNP 55.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG896050 TOG 36,202,175 - 36,204,733 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG897369 SNP 86.1 cowpea - VuCookUCDavis2009 - VuLG01 3_170_TOG897369_1_602 SNP 47.69 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG897369 TOG 7,430,751 - 7,461,684 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG897369_1253 SNP 54 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG897369 TOG 38,894,362 - 38,897,824 (cM) Automated name-based, Automated name-based View Maps