LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set chickpea-CaCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CaChr6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: chickpea - CaCookUCDavis2009 [ View Map Set Info ]
Map Name: CaChr6
Map Start: 0 cM
Map Stop: 64.5 cM
Features by Type:
21 SNP
21 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 21 of 21.
chickpea - CaCookUCDavis2009 - CaChr6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ca_TOG901711 SNP 64.5 barrel medic - Mt3.0 - MtChr6 TOG901711 TOG 19,465,858 - 19,469,789 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG06 Pv_TOG901711 SNP 53.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG901711 TOG 15,317,941 - 15,323,013 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG901744 SNP 64.5 lotus - LjKazusa200905 - LjChr2 TOG901744 TOG 20,271,660 - 20,281,961 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG901744 TOG 7,242,370 - 7,245,493 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 3_224_TOG901744_1_148 SNP 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP134 SNP 48.956 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG901744 TOG 188,321 - 193,391 (cM) Automated name-based, Automated name-based View Maps
Ca21567_38 SNP 58.8 No other positions
Ca_TOG919502 SNP 55.4 barrel medic - Mt3.0 - MtChr6 TOG919502 TOG 16,839,134 - 16,842,779 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG919502 TOG 9,857,771 - 9,860,426 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG919502_530 SNP 13.3 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG898271 SNP 55.4 cowpea - VuCookUCDavis2009 - VuLG05 4_040_TOG898271_2_649 SNP 33.86 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG898271_650 SNP 13.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG898271 TOG 9,803,065 - 9,813,668 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG898271_2 SNP 48.29 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 4_184_TOG898271_2_640 SNP 33.86 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr6 TOG898271 TOG 16,904,954 - 16,913,420 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG06 Pv_TOG898271 SNP 35.9 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG898271_702 SNP 13.3 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG902768 SNP 52.9 soybean - GmJGI8x - Gm09 TOG902768 TOG 35,942,462 - 35,945,949 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG902768 TOG 9,827,775 - 9,831,063 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr6 TOG902768 TOG 17,227,965 - 17,232,822 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG902768_1 SNP 26.47 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG902768_1035 SNP 22.5 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG06 Pv_TOG902768 SNP 26.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP144 SNP 53.087 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895871 SNP 44.6 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895871_254 SNP 45.8 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG895871 SNP 46.9 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG895871 TOG 46,733,016 - 46,735,985 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP35 SNP 96.512 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895871_189 SNP 45.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 4_197_TOG895871_2_102 SNP 29.07 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895871 TOG 12,024,357 - 12,028,281 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG895871_2 SNP 15.99 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 4_052_TOG895871_2_164 SNP 29.07 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG895871 TOG 40,585,120 - 40,588,357 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG896172 SNP 44.6 cowpea - VuCookUCDavis2009 - VuLG06 3_042_TOG896172_2_59 SNP 28.41 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG896172 TOG 40,791,755 - 40,795,878 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG896172 TOG 47,013,414 - 47,016,499 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896172 TOG 11,338,018 - 11,438,111 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895690 SNP 39.9 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895690_763 SNP 39.8 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG895690 SNP 43.6 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895690 TOG 9,422,314 - 9,433,284 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP29 SNP 83.283 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG895690_1 SNP 34.67 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG895690 TOG 6,398,564 - 6,401,809 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895690_622 SNP 39.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_075_TOG895690_1_533 SNP 22.13 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG898231 SNP 26.9 soybean - GmJGI8x - Gm02 TOG898231 TOG 5,082,974 - 5,085,823 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG898231 TOG 50,347,100 - 50,351,451 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG898231_1 SNP 6.17 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG898231 TOG 18,321,688 - 18,325,943 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_181_TOG898231_1_726 SNP 48.04 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG898231 TOG 7,501,389 - 7,505,942 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG898231 SNP 68.4 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903898 SNP 21.7 barrel medic - Mt3.0 - MtChr5 TOG903898 TOG 5,536,805 - 5,538,490 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG903898 SNP 9.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG903898 TOG 51,781,053 - 51,782,819 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG906969 SNP 19.7 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG906969_291 SNP 7.6 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG906969 TOG 4,140,547 - 4,142,109 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG906969 TOG 2,742,158 - 2,743,810 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG906969 SNP 0 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG897619 SNP 19.3 common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG897619 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG897619 TOG 52,906,469 - 52,908,587 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG897619_312 SNP 7 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_139_TOG897619_1_418 SNP 8.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG897619 TOG 4,054,435 - 4,057,886 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG897619 TOG 2,692,897 - 2,695,001 (cM) Automated name-based, Automated name-based View Maps
Ca22434_160 SNP 19.3 No other positions
Ca_TOG898078 SNP 16 lotus - LjKazusa200905 - LjChr0 TOG898078 TOG 29,232,852 - 29,235,947 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG898078 TOG 21,028,775 - 21,031,277 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG898078_1260 SNP 86.4 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG904000 SNP 16 peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP156 SNP 62.994 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG904000 TOG 3,013,126 - 3,015,279 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG904000_1 SNP 12.67 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TOG904000 SNP 47.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG904000 TOG 53,655,184 - 53,656,876 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG919655 SNP 15.2 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG919655_403 SNP 5.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP212 SNP 58.782 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG919655 TOG 2,373,166 - 2,375,283 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG919655 TOG 54,218,197 - 54,221,098 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG919655_1 SNP 18.82 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_246_TOG919655_1_719 SNP 5.74 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG902063 SNP 12.7 soybean - GmJGI8x - Gm01 TOG902063 TOG 54,944,150 - 54,946,966 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG902063_1 SNP 18.82 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG902063 TOG 1,729,033 - 1,731,296 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG902063 TOG 60,335,675 - 60,337,502 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG902063 SNP 37.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP139 SNP 58.782 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG919584 SNP 12.3 peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TOG919584 SNP 56 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG919584_1 SNP 20.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG919584 TOG 1,617,426 - 1,619,603 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP211 SNP 58.216 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895142 SNP 9.8 lotus - LjKazusa200905 - LjChr1 TOG895142 TOG 589,018 - 590,029 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG895142 TOG 55,217,783 - 55,219,657 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG895142 SNP 53.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895142 TOG 890,731 - 898,373 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG924405 SNP 7.3 lotus - LjKazusa200905 - LjChr1 TOG924405 TOG 233,243 - 235,149 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG924405_702 SNP 201.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG924405_2 SNP 98.85 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_358_TOG924405_2_796 SNP 65.81 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG924405 TOG 62,770 - 66,024 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_322_TOG924405_2_796 SNP 65.81 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG924405 TOG 47,863,826 - 47,865,859 (cM) Automated name-based, Automated name-based View Maps