LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set pigeonpea-CcCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CcLG04
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: pigeonpea - CcCookUCDavis2009 [ View Map Set Info ]
Map Name: CcLG04
Map Start: 0 cM
Map Stop: 66.1 cM
Features by Type:
48 SNP
48 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 48.       of 2 | Next
pigeonpea - CcCookUCDavis2009 - CcLG04
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Cc_TOG899661_665 SNP 0 soybean - GmJGI8x - Gm11 TOG899661 TOG 337,668 - 340,196 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP108 SNP 56.063 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG899661 SNP 39.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG899661_1 SNP 22.64 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 4_176_TOG899661_2_756 SNP 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TOG899661 SNP 53.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG899661 TOG 540,232 - 543,326 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG899661_381 SNP 0 soybean - GmJGI8x - Gm11 TOG899661 TOG 337,668 - 340,196 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP108 SNP 56.063 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG899661 SNP 39.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG899661_1 SNP 22.64 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 4_176_TOG899661_2_756 SNP 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TOG899661 SNP 53.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG899661 TOG 540,232 - 543,326 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897680_93 SNP 4.5 lotus - LjKazusa200905 - LjChr2 TOG897680 TOG 59,287,189 - 59,289,176 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG897680_2 SNP 20.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG897680 TOG 54,481,374 - 54,483,584 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP80 SNP 58.957 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG897680 SNP 54.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG897680 TOG 2,024,242 - 2,042,910 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG919655_403 SNP 5.1 barrel medic - Mt3.0 - MtChr5 TOG919655 TOG 2,373,166 - 2,375,283 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG919655 TOG 54,218,197 - 54,221,098 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG919655 SNP 15.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP212 SNP 58.782 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG919655_1 SNP 18.82 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_246_TOG919655_1_719 SNP 5.74 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG905078_268 SNP 6.4 barrel medic - Mt3.0 - MtChr5 TOG905078 TOG 3,343,721 - 3,345,104 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG905078 TOG 9,760,191 - 9,761,407 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG905078 TOG 53,442,181 - 53,443,701 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_184_TOG905078_1_672 SNP 6.72 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897619_312 SNP 7 cowpea - VuCookUCDavis2009 - VuLG06 3_139_TOG897619_1_418 SNP 8.7 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG897619 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG897619 TOG 2,692,897 - 2,695,001 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG897619 TOG 4,054,435 - 4,057,886 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG897619 SNP 19.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG897619 TOG 52,906,469 - 52,908,587 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG902019_409 SNP 7.6 barrel medic - Mt3.0 - MtChr5 TOG902019 TOG 4,176,912 - 4,178,979 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG902019 TOG 2,753,253 - 2,757,812 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG906969_291 SNP 7.6 soybean - GmJGI8x - Gm11 TOG906969 TOG 2,742,158 - 2,743,810 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG906969 TOG 4,140,547 - 4,142,109 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG906969 SNP 19.7 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG906969 SNP 0 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG900261_213 SNP 10.2 common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG900261 SNP 60.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG900261 TOG 22,725,087 - 22,727,240 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG03 Ah2n_TOG900261_1 SNP 67.83 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr8 Ca_TOG900261 SNP 36.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG900261 TOG 29,436,640 - 29,439,135 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897516_858 SNP 10.2 soybean - GmJGI8x - Gm01 TOG897516 TOG 52,340,452 - 52,342,856 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG897516 TOG 57,792,209 - 57,793,830 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG897516 SNP 5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG897516 TOG 4,715,892 - 4,719,241 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG918895_98 SNP 14.7 soybean - GmJGI8x - Gm01 TOG918895 TOG 51,429,077 - 51,430,474 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG918895 TOG 29,741,132 - 29,744,215 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_370_TOG918895_2_273 SNP 12.36 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG918895 SNP 53.8 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG898302_718 SNP 17.2 common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG898302 SNP 22.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG898302 TOG 4,429,897 - 4,435,175 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG898302 TOG 54,162,277 - 54,164,203 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG929271_316 SNP 17.2 barrel medic - Mt3.0 - MtChr5 TOG929271 TOG 7,458,615 - 7,460,669 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG929271 TOG 50,301,946 - 50,304,238 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG929271 SNP 31 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_094_TOG929271_1_475 SNP 16.33 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894885_218 SNP 17.2 chickpea - CaCookUCDavis2009 - CaChr8 Ca_TOG894885 SNP 30.7 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG894885 SNP 24.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG894885 TOG 30,012,063 - 30,014,494 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_314_TOG894885_1_205 SNP 47.06 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894885 TOG 17,573,101 - 17,575,310 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894885 TOG 4,582,085 - 4,583,602 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG913027_684 SNP 17.2 soybean - GmJGI8x - Gm17 TOG913027 TOG 20,821,371 - 20,824,951 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG913027 TOG 50,958,230 - 50,960,151 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_099_TOG913027_1_412 SNP 14.99 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG913027 TOG 6,657,477 - 6,669,666 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894885_51 SNP 17.2 chickpea - CaCookUCDavis2009 - CaChr8 Ca_TOG894885 SNP 30.7 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG894885 SNP 24.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG894885 TOG 30,012,063 - 30,014,494 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_314_TOG894885_1_205 SNP 47.06 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894885 TOG 17,573,101 - 17,575,310 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894885 TOG 4,582,085 - 4,583,602 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG899127_253 SNP 27.9 common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG899127 SNP 43.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG899127 TOG 49,830,656 - 49,834,889 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG899127 TOG 52,967,195 - 52,970,724 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG899127 TOG 8,052,882 - 8,057,624 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894427_253 SNP 27.9 barrel medic - Mt3.0 - MtChr5 TOG894427 TOG 8,052,882 - 8,057,624 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG894427 TOG 49,830,656 - 49,834,889 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894427 TOG 52,967,195 - 52,970,724 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 4_208_TOG894427_1_356 SNP 16.98 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894427 TOG 19,801,588 - 19,805,443 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG924194_488 SNP 38.5 soybean - GmJGI8x - Gm01 TOG924194 TOG 49,214,225 - 49,215,248 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG924194 TOG 33,087,583 - 33,088,883 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG924194 TOG 8,919,560 - 8,921,023 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG924194 TOG 6,020,480 - 6,021,941 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG906886_142 SNP 38.5 soybean - GmJGI8x - Gm01 TOG906886 TOG 49,214,211 - 49,215,705 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG906886 TOG 8,919,555 - 8,921,027 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG906886 TOG 6,020,480 - 6,021,941 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG906886 SNP 42.8 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG895690_622 SNP 39.8 barrel medic - Mt3.0 - MtChr5 TOG895690 TOG 9,422,314 - 9,433,284 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP29 SNP 83.283 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG895690 SNP 39.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG895690 SNP 43.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG895690_1 SNP 34.67 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_075_TOG895690_1_533 SNP 22.13 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG895690 TOG 6,398,564 - 6,401,809 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG906701_506 SNP 39.8 soybean - GmJGI8x - Gm11 TOG906701 TOG 6,359,202 - 6,360,546 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_188_TOG906701_2_1330 SNP 23.11 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG906701 TOG 26,011,644 - 26,025,783 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG906701 TOG 18,664,080 - 18,665,343 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG906701 TOG 49,888,864 - 49,890,382 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG924039_920 SNP 39.8 soybean - GmJGI8x - Gm01 TOG924039 TOG 48,818,830 - 48,822,619 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG924039 TOG 9,542,037 - 9,548,300 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG915674_464 SNP 39.8 peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP199 SNP 83.853 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG915674 TOG 48,818,830 - 48,822,619 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG915674 TOG 9,542,037 - 9,548,300 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_030_TOG915674_2_808 SNP 22.46 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG895690_763 SNP 39.8 barrel medic - Mt3.0 - MtChr5 TOG895690 TOG 9,422,314 - 9,433,284 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP29 SNP 83.283 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG895690 SNP 39.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG895690 SNP 43.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG895690_1 SNP 34.67 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_075_TOG895690_1_533 SNP 22.13 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG895690 TOG 6,398,564 - 6,401,809 (cM) Automated name-based, Automated name-based View Maps