LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set pigeonpea-CcCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CcLG10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: pigeonpea - CcCookUCDavis2009 [ View Map Set Info ]
Map Name: CcLG10
Map Start: 0 cM
Map Stop: 212.9 cM
Features by Type:
134 SNP
134 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 134.       of 6 | Next
pigeonpea - CcCookUCDavis2009 - CcLG10
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Cc_TOG902016_49 SNP 212.9 chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG902016 SNP 68.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 SNP138 SNP 30.891 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG902016 TOG 32,714,249 - 32,717,808 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG902016 TOG 46,615,596 - 46,617,446 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG902016 SNP 92.4 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896078_791 SNP 212.2 soybean - GmJGI8x - Gm20 TOG896078 TOG 46,467,086 - 46,471,447 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG896078 SNP 90.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG14 Ah2n_TOG896078_2 SNP 1.29 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896078 TOG 32,600,845 - 32,605,713 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896733_248 SNP 212.2 soybean - GmJGI8x - Gm20 TOG896733 TOG 46,467,086 - 46,471,447 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG896733 SNP 68.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896733 TOG 32,600,845 - 32,605,713 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG899042_372 SNP 210.2 soybean - GmJGI8x - Gm10 TOG899042 TOG 49,844,351 - 49,848,704 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG899042 SNP 80.7 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896942_629 SNP 207.6 soybean - GmJGI8x - Gm10 TOG896942 TOG 49,488,080 - 49,494,274 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG896942 TOG 57,978,738 - 57,983,529 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG14 Ah2n_TOG896942_2 SNP 13.39 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP65 SNP 33.337 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894081_250 SNP 207.6 lotus - LjKazusa200905 - LjChr5 TOG894081 TOG 57,947,776 - 57,952,264 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894081 TOG 36,869,054 - 36,873,687 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_117_TOG894081_1_1677 SNP 71.73 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894081 TOG 1,283,088 - 1,287,371 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894081 SNP 79.1 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896850_41 SNP 207.6 soybean - GmJGI8x - Gm10 TOG896850 TOG 49,657,469 - 49,660,997 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG896850 SNP 79.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG896850 TOG 33,899,467 - 33,903,198 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG908017_297 SNP 207.6 soybean - GmJGI8x - Gm10 TOG908017 TOG 49,245,946 - 49,247,471 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG908017 TOG 34,439,347 - 34,444,040 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG908017 SNP 77.5 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_173_TOG908017_2_333 SNP 68.76 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894794_484 SNP 207.6 cowpea - VuCookUCDavis2009 - VuLG10 3_089_TOG894794_1_474 SNP 72.39 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894794 SNP 79.1 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG894794 TOG 57,791,827 - 57,796,722 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894794 TOG 49,599,312 - 49,602,326 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896362_236 SNP 205.6 peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP47 SNP 41.457 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896362 TOG 48,517,140 - 48,519,799 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG896362_1 SNP 113.19 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG898826_25 SNP 205.6 soybean - GmJGI8x - Gm20 TOG898826 TOG 35,867,131 - 35,873,125 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG898826 TOG 55,739,275 - 55,740,944 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_218_TOG898826_1_147 SNP 67.44 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG898826 SNP 71.6 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG924405_702 SNP 201.6 cowpea - VuCookUCDavis2009 - VuLG10 4_358_TOG924405_2_796 SNP 65.81 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG924405 SNP 7.3 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG924405 TOG 233,243 - 235,149 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG924405_2 SNP 98.85 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG924405 TOG 47,863,826 - 47,865,859 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG924405 TOG 62,770 - 66,024 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_322_TOG924405_2_796 SNP 65.81 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG910718_241 SNP 200.3 cowpea - VuCookUCDavis2009 - VuLG10 3_062_TOG910718_1_471 SNP 65.81 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG910718 TOG 55,467,662 - 55,482,278 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG910718 TOG 30,111,910 - 30,117,359 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG910718 SNP 70 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_317_TOG910718_1_179 SNP 65.81 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG910718_1 SNP 99.49 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG910718 TOG 47,804,829 - 47,809,376 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG910718 SNP 60.4 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG913485_145 SNP 195 barrel medic - Mt3.0 - MtChr1 TOG913485 TOG 29,733,632 - 29,741,643 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG913485 SNP 67.6 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG913485 TOG 1,067,116 - 1,075,424 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG913485 TOG 37,154,093 - 37,161,334 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897715_743 SNP 192.4 cowpea - VuCookUCDavis2009 - VuLG10 3_017_TOG897715_2_290 SNP 62.49 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG897715 TOG 46,634,955 - 46,637,464 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG897715 SNP 58 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG897715 SNP 65.1 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_083_TOG897715_2_1046 SNP 62.49 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897715_421 SNP 192.4 cowpea - VuCookUCDavis2009 - VuLG10 3_017_TOG897715_2_290 SNP 62.49 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG897715 TOG 46,634,955 - 46,637,464 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG897715 SNP 58 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG897715 SNP 65.1 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_083_TOG897715_2_1046 SNP 62.49 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG895578_782 SNP 191.8 peanut - AA_A.duranensis_x_A.stenosperma_d - A09 TOG895578 SNP 33.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG895578 TOG 46,202,370 - 46,206,618 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_363_TOG895578_1_79 SNP 60.49 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895578 SNP 62.6 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895578 SNP 57.6 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG895578 TOG 28,907,215 - 28,911,751 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895578 TOG 34,696,090 - 34,698,513 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP28 SNP 49.943 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_132_TOG895578_1_214 SNP 60.49 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG895578_769 SNP 191.8 peanut - AA_A.duranensis_x_A.stenosperma_d - A09 TOG895578 SNP 33.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG895578 TOG 46,202,370 - 46,206,618 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_363_TOG895578_1_79 SNP 60.49 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895578 SNP 62.6 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895578 SNP 57.6 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG895578 TOG 28,907,215 - 28,911,751 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895578 TOG 34,696,090 - 34,698,513 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP28 SNP 49.943 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_132_TOG895578_1_214 SNP 60.49 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG916205_134 SNP 190.5 cowpea - VuCookUCDavis2009 - VuLG10 3_134_TOG916205_2_555 SNP 58.53 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG916205 TOG 32,709,117 - 32,711,532 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG916205 TOG 45,521,434 - 45,523,517 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896007_521 SNP 190.5 chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG896007 SNP 56 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG896007 TOG 38,737,434 - 38,741,341 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG896007_1 SNP 89.84 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896007 TOG 28,429,937 - 28,433,984 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP38 SNP 51.507 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_267_TOG896007_1_1311 SNP 58.53 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG898824_622 SNP 185.9 soybean - GmJGI8x - Gm10 TOG898824 TOG 44,299,930 - 44,303,079 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG898824 SNP 57.5 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG915521_157 SNP 184 soybean - GmJGI8x - Gm16 TOG915521 TOG 31,144,912 - 31,148,374 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG915521 TOG 26,129,937 - 26,133,482 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG915521 TOG 43,763,966 - 43,766,762 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG899159_220 SNP 179.4 peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP96 SNP 52.557 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG899159 TOG 41,109,445 - 41,110,307 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A09 TOG899159 SNP 28.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG899159 TOG 24,048,439 - 24,050,382 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG899159 TOG 42,140,630 - 42,141,659 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG899054_72 SNP 178.1 soybean - GmJGI8x - Gm10 TOG899054 TOG 41,859,435 - 41,862,881 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG899054 SNP 24 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG899054_2 SNP 84.38 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG899054 TOG 17,418,670 - 17,424,758 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG901685_600 SNP 176.8 barrel medic - Mt3.0 - MtChr1 TOG901685 TOG 12,699,303 - 12,706,008 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_138_TOG901685_1_933 SNP 47.47 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG901685 TOG 41,630,882 - 41,642,862 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG901685 TOG 31,110,303 - 31,122,353 (cM) Automated name-based, Automated name-based View Maps