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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A2
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
AFLP
Gene
PCR
QTL_fungal
QTL_inorganic
QTL_leaf-stem
QTL_misc
QTL_nematode
QTL_oil
QTL_other-seed
QTL_pod
QTL_protein
QTL_reprod-period
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: A2
Map Start: 0 cM
Map Stop: 165.73 cM
Features by Type:
1 AFLP
10 Gene
1 PCR
8 QTL_fungal
5 QTL_inorganic
7 QTL_leaf-stem
3 QTL_misc
13 QTL_nematode
3 QTL_oil
11 QTL_other-seed
3 QTL_pod
5 QTL_protein
1 QTL_reprod-period
3 QTL_whole-plant
2 QTL_yield
4 RAPD
53 RFLP
70 SNP
72 SSR
275 Total

Map Features

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Items 1 to 25 of 275.       of 11 | Next
soybean - GmComposite2003 - A2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Prot 21-1 QTL_protein 144.57 - 146.57 No other positions
SDS 5-2 QTL_fungal 53.2 - 55.2 No other positions
Sclero 3-2 QTL_fungal 59.59 - 61.59 No other positions
Sclero 5-1 QTL_fungal 59.59 - 61.59 No other positions
Sclero 6-2 QTL_fungal 59.59 - 61.59 No other positions
SCN 1-1 QTL_nematode 31.22 - 33.22 No other positions
SCN 3-1 QTL_nematode 47.8 - 49.8 No other positions
SCN 8-4 QTL_nematode 65.8 - 67.8 No other positions
SCN 8-5 QTL_nematode 53.2 - 55.2 No other positions
SCN 9-1 QTL_nematode 70.38 - 72.38 No other positions
SCN 9-2 QTL_nematode 47.8 - 49.8 No other positions
SCN 9-3 QTL_nematode 56.9 - 58.9 No other positions
SCN 13-2 QTL_nematode 53.2 - 55.2 No other positions
Sclero 2-2 QTL_fungal 59.59 - 61.59 No other positions
Sclero 2-3 QTL_fungal 99.09 - 101.09 No other positions
T153_1 RFLP 50.41 soybean - GmComposite2003 - E T153_2 RFLP 14.96 (cM) Automated name-based View Maps
soybean - GmComposite2003 - A1 T153_3 RFLP 56.18 (cM) Automated name-based View Maps
B172_2 RFLP 51.08 soybean - GmComposite2003 - A1 B172_1 RFLP 60.09 (cM) Automated name-based View Maps
Satt632 SSR 51.5 soybean - GmCons30cM - A2 Satt632 SSR 51.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - A2 Satt632 SSR 46.28 (cM) Automated name-based, Automated name-based View Maps
Sat_157 SSR 51.57 soybean - GmCons30cM - A2 Sat_157 SSR 51.56 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - A2 Sat_157 SSR 46.35 (cM) Automated name-based, Automated name-based View Maps
Sat_162 SSR 51.86 soybean - GmCons40cM - A2 Sat_162 SSR 46.56 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - A2 Sat_162 SSR 51.86 (cM) Automated name-based, Automated name-based View Maps
BLT024_1 RFLP 52.49 No other positions
Lectin PCR 50 No other positions
A262_2 RFLP 50.08 soybean - GmComposite2003 - H A262_5 RFLP 23.46 (cM) Automated name-based View Maps
soybean - GmComposite2003 - A1 A262_1 RFLP 53.38 (cM) Automated name-based View Maps
soybean - GmComposite2003 - B1 A262_3 RFLP 54.75 (cM) Automated name-based View Maps
soybean - GmComposite2003 - C2 A262_4 RFLP 25.07 (cM) Automated name-based View Maps
NitR6 1-1 QTL_inorganic 106.05 - 108.05 No other positions
Fucose 1-1 QTL_other-seed 94.43 - 104.43 No other positions