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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps B1
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
PCR
QTL_fungal
QTL_inorganic
QTL_leaf-stem
QTL_nematode
QTL_oil
QTL_other-seed
QTL_pod
QTL_protein
QTL_reprod-period
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: B1
Map Start: 0 cM
Map Stop: 131.8 cM
Features by Type:
4 Gene
2 PCR
1 QTL_fungal
3 QTL_inorganic
6 QTL_leaf-stem
9 QTL_nematode
2 QTL_oil
4 QTL_other-seed
2 QTL_pod
2 QTL_protein
1 QTL_reprod-period
2 QTL_whole-plant
2 QTL_yield
1 RAPD
37 RFLP
39 SNP
47 SSR
164 Total

Map Features

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Items 1 to 25 of 164.       of 7 | Next
soybean - GmComposite2003 - B1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
SLW 1-1 QTL_leaf-stem 65.77 - 67.77 No other positions
Sprt yld 1-1 QTL_yield 58.66 - 60.66 No other positions
Sclero 3-3 QTL_fungal 45.39 - 47.39 No other positions
SCN 2-1 QTL_nematode 63.77 - 65.77 No other positions
SCN 2-2 QTL_nematode 124.98 - 126.98 No other positions
SCN 17-1 QTL_nematode 84.19 - 100.99 No other positions
SCN 18-2 QTL_nematode 84.19 - 100.99 No other positions
Sd wt 4-1 QTL_other-seed 57.91 - 59.91 No other positions
Sd wt 6-3 QTL_other-seed 4.07 - 6.07 No other positions
Sd wt 10-3 QTL_other-seed 80.31 - 82.31 No other positions
Sd wt 11-1 QTL_other-seed 58.66 - 60.66 No other positions
Sct_026 SSR 78.12 soybean - GmCons30cM - B1 Sct_026 SSR 78.13 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - B1 Sct_026 SSR 78.02 (cM) Automated name-based, Automated name-based View Maps
G214_3 RFLP 78.91 soybean - GmComposite2003 - A1 G214_1 RFLP 35.59 (cM) Automated name-based View Maps
soybean - GmComposite2003 - B2 G214_6 RFLP 116.77 (cM) Automated name-based View Maps
soybean - GmComposite2003 - B2 G214_4 RFLP 70.87 (cM) Automated name-based View Maps
soybean - GmComposite2003 - B2 G214_5 RFLP 75.8 (cM) Automated name-based View Maps
soybean - GmComposite2003 - D1b G214_7 RFLP 117.02 (cM) Automated name-based View Maps
soybean - GmComposite2003 - D2 G214_8 RFLP 18.42 (cM) Automated name-based View Maps
soybean - GmComposite2003 - D2 G214_9 RFLP 92.66 (cM) Automated name-based View Maps
soybean - GmComposite2003 - A2 G214_2 RFLP 103.47 (cM) Automated name-based View Maps
Satt298 SSR 64.91 No other positions
BLT043_1 RFLP 66.76 No other positions
mO011_1 RFLP 71.23 No other positions
Sat_348 SSR 71.97 soybean - GmCons40cM - B1 Sat_348 SSR 72.09 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - B1 Sat_348 SSR 71.97 (cM) Automated name-based, Automated name-based View Maps
GM021 RFLP 72.59 No other positions
Satt597 SSR 73.76 soybean - GmCons40cM - B1 Satt597 SSR 74.21 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - B1 Satt597 SSR 73.77 (cM) Automated name-based, Automated name-based View Maps
BLT019_2 RFLP 74.57 soybean - GmComposite2003 - H BLT019_1 RFLP 72.77 (cM) Automated name-based View Maps
Prot 16-1 QTL_protein 35.48 - 37.48 No other positions
Prot 3-2 QTL_protein 28.17 - 30.17 No other positions
Pod mat 6-1 QTL_pod 65.77 - 67.77 No other positions
Pod mat 6-2 QTL_pod 44 - 46 No other positions
Pl ht 5-2 QTL_whole-plant 65.77 - 67.77 No other positions