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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps C1
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
AFLP
Gene
Marker
QTL_inorganic
QTL_leaf-stem
QTL_nematode
QTL_oil
QTL_other-seed
QTL_pod
QTL_protein
QTL_reprod-period
QTL_whole-plant
QTL_yield
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: C1
Map Start: -1 cM
Map Stop: 136.06 cM
Features by Type:
1 AFLP
4 Gene
2 Marker
2 QTL_inorganic
2 QTL_leaf-stem
2 QTL_nematode
5 QTL_oil
4 QTL_other-seed
6 QTL_pod
10 QTL_protein
2 QTL_reprod-period
4 QTL_whole-plant
4 QTL_yield
26 RFLP
55 SNP
58 SSR
187 Total

Map Features

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Items 1 to 25 of 187.       of 8 | Next
soybean - GmComposite2003 - C1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Prot 21-2 QTL_protein 122.79 - 124.79 No other positions
Sd yld 12-2 QTL_yield 77.65 - 79.65 No other positions
Reprod 2-2 QTL_reprod-period 76.27 - 78.27 No other positions
Reprod 3-4 QTL_reprod-period 75 - 77 No other positions
A074_1 RFLP 133.97 No other positions
Satt164 SSR 132.46 soybean - GmCons30cM - C1 Satt164 SSR 132.46 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - C1 Satt164 SSR 109.23 (cM) Automated name-based, Automated name-based View Maps
Satt180 SSR 127.76 No other positions
Oil 20-1 QTL_oil 122.79 - 124.79 No other positions
Sd wt 5-2 QTL_other-seed 72.17 - 74.17 No other positions
Sd wt 6-7 QTL_other-seed 32.3 - 34.3 No other positions
Sd wt 13-4 QTL_other-seed -1 - 1 No other positions
cqOil-001 QTL_oil 89.72 - 91.72 No other positions
L014_1 RFLP 127.38 No other positions
Satt682 SSR 127.05 soybean - GmCons40cM - C1 Satt682 SSR 104.01 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - C1 Satt682 SSR 127.06 (cM) Automated name-based, Automated name-based View Maps
EV3_1 RFLP 126.5 No other positions
Prot 4-1 QTL_protein 107 - 109 No other positions
Prot 4-2 QTL_protein 125.5 - 127.5 No other positions
Prot 4-3 QTL_protein 96 - 98 No other positions
Prot 4-4 QTL_protein 20.04 - 22.04 No other positions
Prot 7-2 QTL_protein 64.08 - 66.08 No other positions
Prot 9-2 QTL_protein 9.34 - 11.34 No other positions
Prot 12-2 QTL_protein 32.3 - 34.3 No other positions
Prot 3-3 QTL_protein 89.7 - 91.7 No other positions
Satt338 SSR 123.79 soybean - GmCons40cM - C1 Satt338 SSR 101.22 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - C1 Satt338 SSR 123.79 (cM) Automated name-based, Automated name-based View Maps
AI794821 SSR 122.62 soybean - GmCons30cM - C1 AI794821 SSR 122.62 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - C1 AI794821 SSR 99.51 (cM) Automated name-based, Automated name-based View Maps