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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps C2
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
PCR
QTL_fungal
QTL_inorganic
QTL_insect
QTL_leaf-stem
QTL_nematode
QTL_oil
QTL_other-seed
QTL_pod
QTL_protein
QTL_reprod-period
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: C2
Map Start: -1 cM
Map Stop: 157.88 cM
Features by Type:
3 Gene
2 PCR
7 QTL_fungal
2 QTL_inorganic
2 QTL_insect
13 QTL_leaf-stem
4 QTL_nematode
4 QTL_oil
9 QTL_other-seed
19 QTL_pod
3 QTL_protein
15 QTL_reprod-period
20 QTL_whole-plant
21 QTL_yield
2 RAPD
50 RFLP
54 SNP
68 SSR
298 Total

Map Features

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Items 1 to 25 of 298.       of 12 | Next
soybean - GmComposite2003 - C2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
SDS 8-2 QTL_fungal 120.27 - 122.27 No other positions
SLW 1-2 QTL_leaf-stem 16.1 - 18.1 No other positions
Prot 21-3 QTL_protein 97.07 - 99.07 No other positions
Pod mat 14-3 QTL_pod 111.84 - 113.84 No other positions
Pl ht 18-4 QTL_whole-plant 111.84 - 113.84 No other positions
Pl ht 17-9 QTL_whole-plant 106.59 - 108.59 No other positions
Pl ht 17-6 QTL_whole-plant 106.59 - 108.59 No other positions
SDS 7-5 QTL_fungal 144.48 - 146.48 No other positions
SDS 2-5 QTL_fungal 149 - 151 No other positions
SDS 2-6 QTL_fungal 131 - 133 No other positions
Sd yld 11-1 QTL_yield 39.3 - 41.3 No other positions
Sd yld 11-2 QTL_yield 111.2 - 113.2 No other positions
SDS 1-1 QTL_fungal 149 - 151 No other positions
SDS 1-3 QTL_fungal 131 - 133 No other positions
SCN 9-6 QTL_nematode 94.61 - 96.61 No other positions
SCN 17-3 QTL_nematode 126.24 - 145.48 No other positions
Reprod 4-1 QTL_reprod-period 22.34 - 24.34 No other positions
Reprod 4-2 QTL_reprod-period 112.4 - 114.4 No other positions
R183_2 RFLP 157.88 soybean - GmComposite2003 - A1 R183_1 RFLP 42.41 (cM) Automated name-based View Maps
Satt357 SSR 151.91 soybean - GmCons30cM - C2 Satt357 SSR 151.91 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - C2 Satt357 SSR 133.35 (cM) Automated name-based, Automated name-based View Maps
A676_1 RFLP 148.61 No other positions
OO05_250 RAPD 150 No other positions
Oil 23-1 QTL_oil 107.59 - 117.77 No other positions
FT 2-1 QTL_reprod-period 111 - 118 No other positions
NECRO 1-3 QTL_inorganic 68.67 - 70.67 No other positions