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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps D2
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
Marker
PCR
QTL_fungal
QTL_insect
QTL_leaf-stem
QTL_nematode
QTL_oil
QTL_other-seed
QTL_protein
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: D2
Map Start: 0 cM
Map Stop: 140.87 cM
Features by Type:
3 Gene
1 Marker
1 PCR
8 QTL_fungal
1 QTL_insect
5 QTL_leaf-stem
2 QTL_nematode
5 QTL_oil
3 QTL_other-seed
4 QTL_protein
1 QTL_whole-plant
4 QTL_yield
3 RAPD
23 RFLP
65 SNP
75 SSR
204 Total

Map Features

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Items 1 to 25 of 204.       of 9 | Next
soybean - GmComposite2003 - D2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Sclero 3-6 QTL_fungal 56.07 - 58.07 No other positions
Sclero 3-7 QTL_fungal 123.31 - 125.31 No other positions
Sclero 4-2 QTL_fungal 88.02 - 93.71 No other positions
Sclero 6-4 QTL_fungal 123.31 - 125.31 No other positions
SCN 16-1 QTL_nematode 86.25 - 88.25 No other positions
Sclero 2-8 QTL_fungal 23.52 - 25.52 No other positions
Sclero 2-9 QTL_fungal 87.02 - 89.02 No other positions
Sclero 2-10 QTL_fungal 123.31 - 125.31 No other positions
Oil 23-3 QTL_oil 24.52 - 57.07 No other positions
CHLO 1-2 QTL_whole-plant 56.51 - 58.51 No other positions
Conglycinin 1-1 QTL_protein 79.19 - 81.19 No other positions
Glycinin 1-1 QTL_protein 79.19 - 81.19 No other positions
Sd wt 13-5 QTL_other-seed 56.1 - 58.1 No other positions
Sd wt 14-1 QTL_other-seed 28.56 - 30.56 No other positions
Sd yld 5-2 QTL_yield 46.73 - 48.73 No other positions
Sd wt 3-1 QTL_other-seed 9.35 - 11.35 No other positions
Prot 17-2 QTL_protein 105.49 - 109.49 No other positions
Oil 5-4 QTL_oil 78.4 - 80.4 No other positions
Oil 5-5 QTL_oil 72.5 - 74.5 No other positions
Oil 5-6 QTL_oil 78.6 - 80.6 No other positions
LASH 1-5 QTL_leaf-stem 72.5 - 74.5 No other positions
Tel3ABCa Marker 133.85 No other positions
Sct_137 SSR 128.94 soybean - GmCons40cM - D2 Sct_137 SSR 114.31 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - D2 Sct_137 SSR 128.95 (cM) Automated name-based, Automated name-based View Maps
Sat_220 SSR 128.72 soybean - GmCons40cM - D2 Sat_220 SSR 114.29 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - D2 Sat_220 SSR 128.73 (cM) Automated name-based, Automated name-based View Maps
Satt386 SSR 125 soybean - GmCons40cM - D2 Satt386 SSR 110.43 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - D2 Satt386 SSR 125 (cM) Automated name-based, Automated name-based View Maps