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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps E
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
Marker
PCR
QTL_fungal
QTL_inorganic
QTL_insect
QTL_leaf-stem
QTL_misc
QTL_nematode
QTL_oil
QTL_other-seed
QTL_pod
QTL_protein
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: E
Map Start: 0 cM
Map Stop: 115 cM
Features by Type:
3 Gene
1 Marker
2 PCR
4 QTL_fungal
5 QTL_inorganic
2 QTL_insect
12 QTL_leaf-stem
5 QTL_misc
8 QTL_nematode
15 QTL_oil
3 QTL_other-seed
4 QTL_pod
8 QTL_protein
5 QTL_whole-plant
3 QTL_yield
9 RAPD
53 RFLP
64 SNP
57 SSR
263 Total

Map Features

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Items 1 to 25 of 263.       of 11 | Next
soybean - GmComposite2003 - E
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Pl ht 18-5 QTL_whole-plant 2.3 - 4.3 No other positions
Sclero 3-8 QTL_fungal 21.84 - 23.84 No other positions
Sclero 4-3 QTL_fungal 21.84 - 23.84 No other positions
Sclero 5-5 QTL_fungal 21.84 - 23.84 No other positions
SCN 12-2 QTL_nematode 16.12 - 18.12 No other positions
Sclero 2-11 QTL_fungal 21.84 - 23.84 No other positions
cqProt-001 QTL_protein 29.89 - 31.89 No other positions
NitR7 1-3 QTL_inorganic 43.27 - 45.27 No other positions
NitR7 1-4 QTL_inorganic 44.4 - 46.4 No other positions
NitR7 1-5 QTL_inorganic 45.65 - 47.65 No other positions
NitR5 1-5 QTL_inorganic 43.76 - 45.76 No other positions
NitR5 1-6 QTL_inorganic 44.4 - 46.4 No other positions
Sd wt 6-1 QTL_other-seed 46.57 - 48.57 No other positions
Sd wt 11-2 QTL_other-seed 22.7 - 24.7 No other positions
Satt151 SSR 44.93 No other positions
Satt185 SSR 44.75 soybean - GmCons40cM - E Satt185 SSR 76.27 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - E Satt185 SSR 44.76 (cM) Automated name-based, Automated name-based View Maps
Prot 4-5 QTL_protein 25.02 - 27.02 No other positions
Prot 4-6 QTL_protein 26.3 - 28.3 No other positions
Prot 4-13 QTL_protein 44 - 46 No other positions
Prot 5-1 QTL_protein 29.9 - 31.9 No other positions
Prot 17-3 QTL_protein 18.8 - 20 No other positions
Prot 3-6 QTL_protein 29.88 - 31.88 No other positions
Sd yld 16-5 QTL_yield 32.47 - 34.47 No other positions
Sd yld 16-4 QTL_yield 2.3 - 4.3 No other positions
Prot 1-5 QTL_protein 5.3 - 7.3 No other positions