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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
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Maps F
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
PCR
QTL_fungal
QTL_inorganic
QTL_insect
QTL_leaf-stem
QTL_misc
QTL_nematode
QTL_oil
QTL_other-seed
QTL_pod
QTL_protein
QTL_reprod-period
QTL_viral
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: F
Map Start: -0.41 cM
Map Stop: 150.97 cM
Features by Type:
9 Gene
5 PCR
13 QTL_fungal
1 QTL_inorganic
2 QTL_insect
10 QTL_leaf-stem
1 QTL_misc
14 QTL_nematode
3 QTL_oil
9 QTL_other-seed
1 QTL_pod
4 QTL_protein
1 QTL_reprod-period
1 QTL_viral
15 QTL_whole-plant
11 QTL_yield
4 RAPD
50 RFLP
72 SNP
76 SSR
302 Total

Map Features

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Items 1 to 25 of 302.       of 13 | Next
soybean - GmComposite2003 - F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Sat_229 SSR 62.79 soybean - GmCons40cM - F Sat_229 SSR 44.08 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons30cM - F Sat_229 SSR 62.79 (cM) Automated name-based, Automated name-based View Maps
Phytoph 2-1 QTL_fungal 16.08 - 18.13 No other positions
Phytoph 3-1 QTL_fungal 16.08 - 18.13 No other positions
Phytoph 4-1 QTL_fungal 16.08 - 20.56 No other positions
Pl ht 17-1 QTL_whole-plant 96.97 - 98.97 No other positions
Sd yld 11-3 QTL_yield 141.4 - 143.4 No other positions
Sclero 3-9 QTL_fungal 62.69 - 64.69 No other positions
Sclero 4-4 QTL_fungal 62.69 - 64.69 No other positions
Sclero 5-6 QTL_fungal 62.69 - 64.69 No other positions
Sclero 5-7 QTL_fungal 71.5 - 77.7 No other positions
Sclero 6-5 QTL_fungal 62.69 - 64.69 No other positions
Sclero 6-6 QTL_fungal 70.41 - 72.41 No other positions
Sclero 2-12 QTL_fungal 62.69 - 64.69 No other positions
Reprod 4-4 QTL_reprod-period 66.2 - 68.2 No other positions
P157_1 RFLP 61.9 No other positions
Lf Phos 1-1 QTL_leaf-stem 11.37 - 16.08 No other positions
Lf Phos 1-2 QTL_leaf-stem 0 - 3.86 No other positions
Sd wt 13-6 QTL_other-seed 62.7 - 64.7 No other positions
Sd yld 5-3 QTL_yield 101.08 - 103.08 No other positions
Sd wt 6-6 QTL_other-seed 70.42 - 72.42 No other positions
Sd wt 10-6 QTL_other-seed 2.04 - 4.04 No other positions
Sd wt 10-7 QTL_other-seed 50.5 - 52.5 No other positions
Sd wt 11-3 QTL_other-seed 73.7 - 75.7 No other positions
Sd wt 3-2 QTL_other-seed 46.63 - 48.63 No other positions
Prot 6-2 QTL_protein 104.84 - 106.84 No other positions