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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps J
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
PCR
QTL_fungal
QTL_inorganic
QTL_insect
QTL_leaf-stem
QTL_misc
QTL_nematode
QTL_oil
QTL_other-seed
QTL_pod
QTL_protein
QTL_reprod-period
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: J
Map Start: 0 cM
Map Stop: 109 cM
Features by Type:
7 Gene
3 PCR
16 QTL_fungal
4 QTL_inorganic
2 QTL_insect
18 QTL_leaf-stem
1 QTL_misc
6 QTL_nematode
5 QTL_oil
7 QTL_other-seed
8 QTL_pod
1 QTL_protein
2 QTL_reprod-period
6 QTL_whole-plant
4 QTL_yield
2 RAPD
49 RFLP
72 SNP
55 SSR
268 Total

Map Features

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Items 1 to 25 of 268.       of 11 | Next
soybean - GmComposite2003 - J
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Stear 1-1 QTL_oil 82.15 - 84.15 No other positions
Sd yld 11-5 QTL_yield 72.74 - 74.74 No other positions
SCN 1-2 QTL_nematode 73.04 - 75.04 No other positions
SCN 5-2 QTL_nematode 73.04 - 75.04 No other positions
Reprod 3-1 QTL_reprod-period 14.69 - 16.69 No other positions
Oil 20-3 QTL_oil 24.51 - 26.51 No other positions
BSR 6-9 QTL_fungal 64.04 - 66.04 No other positions
BSR 6-10 QTL_fungal 64.04 - 66.04 No other positions
Sd wt 4-4 QTL_other-seed 27.13 - 29.13 No other positions
TRG(DW) 1-1 QTL_other-seed 24.51 - 26.51 No other positions
TRG(FW) 1-1 QTL_other-seed 24.51 - 26.51 No other positions
BSR 6-1 QTL_fungal 64.04 - 66.04 No other positions
BSR 6-2 QTL_fungal 64.04 - 66.04 No other positions
BSR 6-3 QTL_fungal 64.04 - 66.04 No other positions
BSR 6-4 QTL_fungal 64.04 - 66.04 No other positions
BSR 6-5 QTL_fungal 64.04 - 66.04 No other positions
BSR 6-6 QTL_fungal 64.04 - 66.04 No other positions
BSR 6-7 QTL_fungal 64.04 - 66.04 No other positions
BSR 6-8 QTL_fungal 64.04 - 66.04 No other positions
BSR 5-2 QTL_fungal 66.79 - 68.79 No other positions
Prot 4-7 QTL_protein 26.63 - 28.63 No other positions
R3 1-2 QTL_pod 42.01 - 44.01 No other positions
R7 1-2 QTL_pod 42.01 - 44.01 No other positions
Sd wt 2-6 QTL_other-seed 26.63 - 28.63 No other positions
Pl ht 6-6 QTL_whole-plant 19.8 - 21.8 No other positions