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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps K
Start
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Magnification
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
QTL_fungal
QTL_leaf-stem
QTL_oil
QTL_other-seed
QTL_pod
QTL_protein
QTL_reprod-period
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: K
Map Start: -3 cM
Map Stop: 118.02 cM
Features by Type:
5 Gene
10 QTL_fungal
10 QTL_leaf-stem
5 QTL_oil
6 QTL_other-seed
6 QTL_pod
7 QTL_protein
1 QTL_reprod-period
10 QTL_whole-plant
10 QTL_yield
5 RAPD
29 RFLP
65 SNP
72 SSR
241 Total

Map Features

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Items 1 to 25 of 241.       of 10 | Next
soybean - GmComposite2003 - K
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Sprt yld 1-3 QTL_yield 94.89 - 96.89 No other positions
Pl ht 18-1 QTL_whole-plant 39.86 - 41.86 No other positions
Pl ht 18-3 QTL_whole-plant 35.99 - 37.99 No other positions
Pl ht 17-4 QTL_whole-plant 42.35 - 44.35 No other positions
Sd yld 12-1 QTL_yield 45.74 - 47.38 No other positions
Sd yld 13-1 QTL_yield 47.38 - 49.53 No other positions
Sd yld 13-2 QTL_yield 0.8 - 2.8 No other positions
Sclero 3-11 QTL_fungal 55.62 - 57.52 No other positions
Sclero 3-12 QTL_fungal 79.12 - 81.12 No other positions
Sclero 4-7 QTL_fungal 55.62 - 57.52 No other positions
Sclero 5-10 QTL_fungal 55.62 - 57.52 No other positions
Sclero 1-1 QTL_fungal 46.3 - 48.3 No other positions
Sclero 1-3 QTL_fungal 44.59 - 46.59 No other positions
Sclero 1-6 QTL_fungal 45.6 - 47.3 No other positions
Sclero 2-16 QTL_fungal 55.62 - 57.52 No other positions
Sclero 2-17 QTL_fungal 79.12 - 81.12 No other positions
Sclero 2-18 QTL_fungal 116.02 - 118.02 No other positions
Ldge 11-1 QTL_whole-plant 35.99 - 37.99 No other positions
Sd wt 10-10 QTL_other-seed 29.28 - 31.28 No other positions
Sd wt 3-4 QTL_other-seed 66.73 - 68.73 No other positions
Prot 5-3 QTL_protein 52.9 - 54.9 No other positions
Prot 5-4 QTL_protein 30.75 - 32.75 No other positions
Prot 12-3 QTL_protein 39.86 - 41.86 No other positions
Prot 13-4 QTL_protein 103.79 - 105.79 No other positions
Sd wt 2-7 QTL_other-seed 83.54 - 85.54 No other positions