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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps M
Start
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
QTL_fungal
QTL_inorganic
QTL_insect
QTL_leaf-stem
QTL_misc
QTL_nematode
QTL_oil
QTL_other-seed
QTL_pod
QTL_protein
QTL_reprod-period
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: M
Map Start: -4.08 cM
Map Stop: 142.17 cM
Features by Type:
1 Gene
3 QTL_fungal
1 QTL_inorganic
9 QTL_insect
10 QTL_leaf-stem
1 QTL_misc
1 QTL_nematode
3 QTL_oil
15 QTL_other-seed
10 QTL_pod
6 QTL_protein
9 QTL_reprod-period
13 QTL_whole-plant
13 QTL_yield
2 RAPD
26 RFLP
38 SNP
68 SSR
229 Total

Map Features

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Items 1 to 25 of 229.       of 10 | Next
soybean - GmComposite2003 - M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Pod mat 14-4 QTL_pod 32.47 - 34.47 No other positions
Pl ht 18-6 QTL_whole-plant 32.47 - 34.47 No other positions
Oil 23-6 QTL_oil 35.85 - 49.9 No other positions
Sd yld 11-7 QTL_yield 17.6 - 19.6 No other positions
SCN 3-3 QTL_nematode 74 - 76 No other positions
Sclero 1-2 QTL_fungal 70.09 - 72 No other positions
Reprod 4-3 QTL_reprod-period 32.5 - 34.5 No other positions
Satt729 SSR 61 No other positions
NitR6 1-3 QTL_inorganic 12.56 - 14.56 No other positions
CCW 1-1 QTL_insect 56.29 - 66.99 No other positions
CCW 1-2 QTL_insect 33.47 - 50.1 No other positions
Sd wt 13-11 QTL_other-seed 132.8 - 134.8 No other positions
Sd yld 1-2 QTL_yield 38.98 - 58.5 No other positions
Sd yld 2-1 QTL_yield 39.35 - 41.35 No other positions
Sd yld 3-1 QTL_yield 37.98 - 39.98 No other positions
Sd yld 6-1 QTL_yield 17.6 - 19.6 No other positions
Sd wt 7-6 QTL_other-seed 17.6 - 19.6 No other positions
Sd wt 10-11 QTL_other-seed 6.84 - 8.84 No other positions
Sd wt 12-1 QTL_other-seed 111.08 - 113.08 No other positions
Sd wt 12-4 QTL_other-seed 79.02 - 81.02 No other positions
Reprod 1-2 QTL_reprod-period 37.98 - 39.98 No other positions
Reprod 2-1 QTL_reprod-period 17.6 - 19.6 No other positions
Prot 7-1 QTL_protein 37.98 - 39.98 No other positions
Prot 12-4 QTL_protein 32.5 - 34.5 No other positions
Prot 13-3 QTL_protein 32.5 - 34.5 No other positions