LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmJGI8x
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Gm01
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
SNP
SSR
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmJGI8x [ View Map Set Info ]
Map Name: Gm01
Map Start: 0 cM
Map Stop: 55,915,595 cM
Features by Type:
123 Marker
170 SNP
100 SSR
104 TOG
497 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 497.       of 20 | Next
soybean - GmJGI8x - Gm01
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893966 TOG 49,300,256 - 49,302,728 barrel medic - Mt3.0 - MtChr5 TOG893966 TOG 8,775,599 - 8,778,423 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG893966 TOG 38,120,300 - 38,122,537 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG893966 TOG 5,934,201 - 5,936,349 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG893966 TOG 1,787,945 - 1,791,148 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG893966 TOG 68,896,467 - 68,898,639 (cM) Automated name-based, Automated name-based View Maps
TOG894021 TOG 5,471,233 - 5,473,224 barrel medic - Mt3.0 - MtChr5 TOG894021 TOG 18,199,602 - 18,202,114 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894021 TOG 1,746,464 - 1,748,575 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894021 TOG 10,623,540 - 10,625,426 (cM) Automated name-based, Automated name-based View Maps
TOG894038 TOG 52,633,987 - 52,637,559 soybean - GmJGI8x - Gm05 TOG894038 TOG 5,406,129 - 5,411,405 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG894038 TOG 12,896,548 - 12,899,632 (cM) Automated name-based View Maps
TOG894057 TOG 53,389,713 - 53,393,321 barrel medic - Mt3.0 - MtChr5 TOG894057 TOG 3,427,535 - 3,431,124 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894057 TOG 2,196,794 - 2,199,777 (cM) Automated name-based View Maps
TOG894063 TOG 3,404,540 - 3,410,822 soybean - GmJGI8x - Gm02 TOG894063 TOG 2,981,774 - 2,989,377 (cM) Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG894063_502 SNP 52.2 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894063 TOG 960,878 - 962,201 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894063 TOG 41,633,130 - 41,639,447 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894063 TOG 15,005,806 - 15,012,079 (cM) Automated name-based, Automated name-based View Maps
TOG894129 TOG 54,543,754 - 54,546,769 lotus - LjKazusa200905 - LjChr2 TOG894414 TOG 59,351,121 - 59,354,256 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894129 TOG 1,858,698 - 1,865,068 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894129 TOG 1,944,972 - 1,947,561 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894129 TOG 59,349,360 - 59,354,256 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894129 TOG 40,588,095 - 40,594,512 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894129 TOG 63,617,187 - 63,690,799 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894414 TOG 1,944,972 - 1,947,561 (cM) Automated name-based, Automated name-based View Maps
TOG894154 TOG 3,283,710 - 3,286,852 barrel medic - Mt3.0 - MtChr5 TOG894154 TOG 14,833,326 - 14,838,399 (cM) Automated name-based, Automated name-based View Maps
TOG894317 TOG 54,742,696 - 54,744,435 No other positions
TOG894374 TOG 53,057,232 - 53,060,561 lotus - LjKazusa200905 - LjChr0 TOG894374 TOG 9,621,361 - 9,627,880 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894374 TOG 4,142,048 - 4,148,665 (cM) Automated name-based View Maps
TOG894396 TOG 52,700,823 - 52,705,913 barrel medic - Mt3.0 - MtChr5 TOG894396 TOG 4,370,776 - 4,372,768 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894396 TOG 5,358,013 - 5,360,464 (cM) Automated name-based View Maps
TOG894414 TOG 54,543,754 - 54,546,769 lotus - LjKazusa200905 - LjChr2 TOG894414 TOG 59,351,121 - 59,354,256 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894414 TOG 1,858,698 - 1,865,068 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894414 TOG 40,588,095 - 40,594,512 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894129 TOG 1,944,972 - 1,947,561 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894414 TOG 1,944,972 - 1,947,561 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894414 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
TOG894427 TOG 49,830,656 - 49,834,889 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG894427_253 SNP 27.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894427 TOG 8,052,882 - 8,057,624 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894427 TOG 19,801,588 - 19,805,443 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894427 TOG 52,967,195 - 52,970,724 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 4_208_TOG894427_1_356 SNP 16.98 (cM) Automated name-based, Automated name-based View Maps
TOG894552 TOG 25,147,664 - 25,157,049 lotus - LjKazusa200905 - LjChr2 TOG922957 TOG 30,173,788 - 30,181,632 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894552 TOG 30,173,788 - 30,181,632 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG899078 TOG 30,173,788 - 30,181,566 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894552 TOG 49,202,928 - 49,206,926 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG896081 TOG 30,173,788 - 30,181,632 (cM) Automated name-based, Automated name-based View Maps
TOG894774 TOG 48,903,666 - 48,909,604 barrel medic - Mt3.0 - MtChr5 TOG905216 TOG 9,351,042 - 9,357,105 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG897618 TOG 9,351,042 - 9,357,105 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894774 TOG 49,888,864 - 49,890,382 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894774 TOG 9,351,042 - 9,357,105 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894774 TOG 6,359,202 - 6,360,546 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG894774 TOG 26,011,543 - 26,025,606 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894774 TOG 18,661,226 - 18,667,201 (cM) Automated name-based, Automated name-based View Maps
TOG894895 TOG 523,885 - 527,285 No other positions
TOG895135 TOG 38,692,765 - 38,743,686 barrel medic - Mt3.0 - MtChr4 TOG895135 TOG 2,393,432 - 2,395,935 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG895135 TOG 9,132,200 - 9,134,254 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895135 TOG 33,000,141 - 33,002,202 (cM) Automated name-based, Automated name-based View Maps
TOG895142 TOG 55,217,783 - 55,219,657 lotus - LjKazusa200905 - LjChr1 TOG895142 TOG 589,018 - 590,029 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG895142 SNP 9.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895142 TOG 890,731 - 898,373 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG895142 SNP 53.2 (cM) Automated name-based, Automated name-based View Maps
TOG895201 TOG 50,301,946 - 50,304,013 barrel medic - Mt3.0 - MtChr5 TOG895201 TOG 7,458,615 - 7,460,669 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG929271 TOG 7,458,615 - 7,460,669 (cM) Automated name-based, Automated name-based View Maps
TOG895202 TOG 49,830,656 - 49,834,889 barrel medic - Mt3.0 - MtChr5 TOG895202 TOG 8,052,882 - 8,057,624 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG895202 SNP 43.6 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG895202 TOG 19,801,588 - 19,805,443 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG895202 TOG 52,967,195 - 52,970,724 (cM) Automated name-based, Automated name-based View Maps
TOG896024 TOG 3,541,239 - 3,543,116 chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG896024 SNP 27.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG896024 TOG 2,902,481 - 2,903,554 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896024 TOG 15,108,755 - 15,110,571 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG896024 TOG 41,596,971 - 41,598,210 (cM) Automated name-based, Automated name-based View Maps
TOG896081 TOG 25,147,664 - 25,157,049 lotus - LjKazusa200905 - LjChr2 TOG922957 TOG 30,173,788 - 30,181,632 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896081 TOG 49,202,928 - 49,206,926 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894552 TOG 30,173,788 - 30,181,632 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG899078 TOG 30,173,788 - 30,181,566 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG896081 TOG 30,173,788 - 30,181,632 (cM) Automated name-based, Automated name-based View Maps
TOG896097 TOG 1,613,178 - 1,616,011 cowpea - VuCookUCDavis2009 - VuLG06 4_087_TOG896097_2_796 SNP 32.68 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG896097_2 SNP 2.41 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG896097_1350 SNP 6.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896097 TOG 12,436,533 - 12,439,853 (cM) Automated name-based, Automated name-based View Maps
TOG896186 TOG 47,090,191 - 47,094,087 common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG896186 SNP 50.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG896186 TOG 37,270,100 - 37,274,109 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG896186 TOG 2,256,377 - 2,259,832 (cM) Automated name-based View Maps
TOG896190 TOG 4,850,929 - 4,854,600 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG896190_917 SNP 53.5 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG896190 SNP 37.2 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896190 SNP 42.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 4_146_TOG896190_1_371 SNP 45.54 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 4_013_TOG896190_1_740 SNP 45.54 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG896190_351 SNP 53.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896190 TOG 16,998,302 - 17,003,182 (cM) Automated name-based, Automated name-based View Maps
TOG896234 TOG 54,992,736 - 54,995,855 lotus - LjKazusa200905 - LjChr1 TOG896234 TOG 833,965 - 837,408 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896234 SNP 39.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896234 TOG 1,198,834 - 1,202,908 (cM) Automated name-based, Automated name-based View Maps