LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmJGI8x
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Gm05
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
SNP
SSR
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmJGI8x [ View Map Set Info ]
Map Name: Gm05
Map Start: 0 cM
Map Stop: 41,936,504 cM
Features by Type:
166 Marker
222 SNP
93 SSR
111 TOG
592 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 592.       of 24 | Next
soybean - GmJGI8x - Gm05
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893984 TOG 34,754,887 - 34,758,525 soybean - GmJGI8x - Gm13 TOG893984 TOG 37,943,340 - 37,946,604 (cM) Automated name-based View Maps
TOG893993 TOG 38,924,803 - 38,926,762 barrel medic - Mt3.0 - MtChr6 TOG893993 TOG 5,181,391 - 5,184,351 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG893993 TOG 67,259,967 - 67,261,739 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG893993 TOG 3,571,010 - 3,572,400 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG893993 TOG 8,636,128 - 8,638,447 (cM) Automated name-based View Maps
TOG894017 TOG 38,511,252 - 38,513,182 lotus - LjKazusa200905 - LjChr4 TOG894017 TOG 68,125,390 - 68,127,445 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894017 TOG 38,379,552 - 38,381,869 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894017 TOG 4,007,441 - 4,009,512 (cM) Automated name-based View Maps
TOG894038 TOG 5,406,129 - 5,411,405 soybean - GmJGI8x - Gm01 TOG894038 TOG 52,633,987 - 52,637,559 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG894038 TOG 12,896,548 - 12,899,632 (cM) Automated name-based View Maps
TOG894044 TOG 5,095,106 - 5,097,307 barrel medic - Mt3.0 - MtChr5 TOG894044 TOG 4,206,308 - 4,210,079 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894044 TOG 2,777,697 - 2,780,901 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG894044 SNP 0 (cM) Automated name-based, Automated name-based View Maps
TOG894054 TOG 40,639,286 - 40,642,227 soybean - GmJGI8x - Gm08 TOG894054 TOG 1,807,853 - 1,810,584 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894054 TOG 63,642,039 - 63,644,615 (cM) Automated name-based, Automated name-based View Maps
TOG894073 TOG 34,754,666 - 34,758,603 soybean - GmJGI8x - Gm13 TOG894073 TOG 37,943,340 - 37,946,604 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894073 TOG 19,787,442 - 19,791,048 (cM) Automated name-based, Automated name-based View Maps
TOG894129 TOG 40,588,095 - 40,594,512 soybean - GmJGI8x - Gm01 TOG894129 TOG 54,543,754 - 54,546,769 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894129 TOG 1,858,698 - 1,865,068 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894180 TOG 63,685,521 - 63,690,670 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG903546 TOG 63,685,521 - 63,690,670 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894129 TOG 1,944,972 - 1,947,561 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894129 TOG 59,349,360 - 59,354,256 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894129 TOG 63,617,187 - 63,690,799 (cM) Automated name-based, Automated name-based View Maps
TOG894161 TOG 38,924,803 - 38,926,762 soybean - GmJGI8x - Gm08 TOG894161 TOG 3,571,010 - 3,572,400 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894161 TOG 67,259,967 - 67,261,739 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr6 TOG894161 TOG 5,181,391 - 5,184,351 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG894161 TOG 8,636,128 - 8,638,447 (cM) Automated name-based View Maps
TOG894180 TOG 40,588,095 - 40,594,512 lotus - LjKazusa200905 - LjChr4 TOG894180 TOG 63,685,521 - 63,690,670 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG903546 TOG 63,685,521 - 63,690,670 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894180 TOG 59,349,360 - 59,351,435 (cM) Automated name-based, Automated name-based View Maps
TOG894257 TOG 38,656,034 - 38,659,405 soybean - GmJGI8x - Gm08 TOG894257 TOG 3,840,168 - 3,841,459 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894257 TOG 38,634,736 - 38,639,597 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG914960 TOG 67,949,358 - 67,952,586 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894257 TOG 67,949,314 - 67,952,650 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG03 Cc_TOG894257_403 SNP 33 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_050_TOG894257_1_451 SNP 110.39 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP7 SNP 109.98 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG894257_1 SNP 124.78 (cM) Automated name-based, Automated name-based View Maps
TOG894270 TOG 31,989,942 - 32,012,985 lotus - LjKazusa200905 - LjChr4 TOG894270 TOG 4,750,029 - 4,755,599 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894270 TOG 6,350,813 - 6,355,799 (cM) Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG894270 SNP 70.6 (cM) Automated name-based, Automated name-based View Maps
TOG894308 TOG 34,235,571 - 34,238,923 lotus - LjKazusa200905 - LjChr6 TOG894308 TOG 4,018,109 - 4,022,601 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG894308_1 SNP 161.13 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894308 TOG 236,367 - 239,884 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894308 TOG 26,101,257 - 26,104,312 (cM) Automated name-based, Automated name-based View Maps
TOG894318 TOG 40,220,111 - 40,222,535 barrel medic - Mt3.0 - MtChr4 TOG902130 TOG 40,997,850 - 41,000,334 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894318 TOG 40,997,850 - 41,000,334 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG902130 TOG 64,840,058 - 64,843,050 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894318 TOG 64,840,058 - 64,843,050 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894874 TOG 40,997,850 - 41,000,334 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894318 TOG 2,253,217 - 2,257,252 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894874 TOG 64,840,058 - 64,843,050 (cM) Automated name-based, Automated name-based View Maps
TOG894374 TOG 4,142,048 - 4,148,665 lotus - LjKazusa200905 - LjChr0 TOG894374 TOG 9,621,361 - 9,627,880 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG918556 TOG 9,621,361 - 9,627,880 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG894374 TOG 53,057,232 - 53,060,561 (cM) Automated name-based View Maps
TOG894383 TOG 40,037,959 - 40,039,803 barrel medic - Mt3.0 - MtChr4 TOG894383 TOG 40,652,727 - 40,656,065 (cM) Automated name-based, Automated name-based View Maps
TOG894396 TOG 5,358,013 - 5,360,464 soybean - GmJGI8x - Gm01 TOG894396 TOG 52,700,823 - 52,705,913 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894396 TOG 4,370,776 - 4,372,768 (cM) Automated name-based, Automated name-based View Maps
TOG894414 TOG 40,588,095 - 40,594,512 lotus - LjKazusa200905 - LjChr2 TOG894414 TOG 59,351,121 - 59,354,256 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894414 TOG 1,858,698 - 1,865,068 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894180 TOG 63,685,521 - 63,690,670 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG903546 TOG 63,685,521 - 63,690,670 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG894414 TOG 54,543,754 - 54,546,769 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894414 TOG 1,944,972 - 1,947,561 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894414 TOG 63,685,519 - 63,690,754 (cM) Automated name-based, Automated name-based View Maps
TOG894469 TOG 40,639,286 - 40,642,227 No other positions
TOG894561 TOG 34,754,887 - 34,758,525 barrel medic - Mt3.0 - MtChr5 TOG894561 TOG 19,787,442 - 19,791,048 (cM) Automated name-based, Automated name-based View Maps
TOG894616 TOG 875,114 - 878,486 lotus - LjKazusa200905 - LjChr4 TOG894616 TOG 31,015,636 - 31,016,991 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG961222 TOG 31,015,636 - 31,016,991 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG961222 TOG 25,670,893 - 25,695,034 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894616 TOG 25,670,893 - 25,695,034 (cM) Automated name-based, Automated name-based View Maps
TOG894656 TOG 37,097,656 - 37,101,847 lotus - LjKazusa200905 - LjChr4 TOG901960 TOG 67,928,518 - 67,932,413 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894656 TOG 67,928,518 - 67,932,413 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894656 TOG 35,059,912 - 35,063,680 (cM) Automated name-based, Automated name-based View Maps
TOG894712 TOG 34,454,442 - 34,456,540 peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP15 SNP 138.353 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_108_TOG894712_1_315 SNP 0 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG894712 SNP 91 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG03 Cc_TOG894712_948 SNP 13.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_045_TOG894712_1_164 SNP 0 (cM) Automated name-based, Automated name-based View Maps
TOG894874 TOG 40,220,111 - 40,222,535 barrel medic - Mt3.0 - MtChr4 TOG902130 TOG 40,997,850 - 41,000,334 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894318 TOG 40,997,850 - 41,000,334 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG902130 TOG 64,840,058 - 64,843,050 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894318 TOG 64,840,058 - 64,843,050 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894874 TOG 2,253,217 - 2,257,252 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894874 TOG 40,997,850 - 41,000,334 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894874 TOG 64,840,058 - 64,843,050 (cM) Automated name-based, Automated name-based View Maps
TOG894999 TOG 41,217,001 - 41,220,880 No other positions