LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmJGI8x
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Gm06
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
SNP
SSR
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmJGI8x [ View Map Set Info ]
Map Name: Gm06
Map Start: 0 cM
Map Stop: 50,722,821 cM
Features by Type:
117 Marker
261 SNP
97 SSR
128 TOG
603 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 603.       of 25 | Next
soybean - GmJGI8x - Gm06
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893958 TOG 2,301,159 - 2,303,891 soybean - GmJGI8x - Gm15 TOG893958 TOG 7,976,470 - 7,989,141 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG893958 TOG 31,202,629 - 31,206,771 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG893958 TOG 7,225,114 - 7,230,315 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG893958 TOG 26,270,240 - 26,274,467 (cM) Automated name-based, Automated name-based View Maps
TOG893962 TOG 11,730,656 - 11,741,751 lotus - LjKazusa200905 - LjChr1 TOG893962 TOG 86,639,586 - 86,641,313 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG893962 TOG 42,097,629 - 42,100,137 (cM) Automated name-based, Automated name-based View Maps
TOG894022 TOG 11,457,198 - 11,459,090 soybean - GmJGI8x - Gm18 TOG894022 TOG 4,342,624 - 4,344,446 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG894022 SNP 63.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG894022 TOG 45,983,446 - 45,985,237 (cM) Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894022_393 SNP 38.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG894022 TOG 32,032,517 - 32,033,221 (cM) Automated name-based, Automated name-based View Maps
TOG894029 TOG 14,292,743 - 14,296,256 soybean - GmJGI8x - Gm04 TOG894029 TOG 43,509,240 - 43,512,745 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894029 TOG 29,612,783 - 29,616,430 (cM) Automated name-based, Automated name-based View Maps
TOG894037 TOG 6,068,469 - 6,072,110 common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG894037 SNP 48.4 (cM) Automated name-based, Automated name-based View Maps
TOG894091 TOG 965,441 - 966,026 barrel medic - Mt3.0 - MtChr3 TOG894091 TOG 41,748,010 - 41,752,807 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894091 TOG 19,863,169 - 19,866,796 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894091 TOG 53,048,756 - 53,052,144 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894091 TOG 3,183,824 - 3,186,891 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894091 TOG 8,988,547 - 8,991,996 (cM) Automated name-based View Maps
TOG894147 TOG 11,107,243 - 11,112,222 lotus - LjKazusa200905 - LjChr2 TOG894147 TOG 53,331,023 - 53,333,933 (cM) Automated name-based, Automated name-based View Maps
TOG894165 TOG 9,164,325 - 9,167,729 barrel medic - Mt3.0 - MtChr3 TOG947063 TOG 24,325,184 - 24,330,690 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG894165 TOG 8,819,291 - 8,821,144 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894165 TOG 24,325,184 - 24,330,690 (cM) Automated name-based, Automated name-based View Maps
TOG894169 TOG 2,301,159 - 2,303,891 cowpea - VuCookUCDavis2009 - VuLG01 3_289_TOG894169_1_306 SNP 64.41 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894169_509 SNP 10.8 (cM) Automated name-based, Automated name-based View Maps
TOG894195 TOG 5,893,326 - 5,895,669 barrel medic - Mt3.0 - MtChr3 TOG894195 TOG 33,787,937 - 33,794,593 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG894195 TOG 6,211,414 - 6,218,377 (cM) Automated name-based View Maps
TOG894248 TOG 965,441 - 966,026 barrel medic - Mt3.0 - MtChr4 TOG894248 TOG 19,863,169 - 19,866,796 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG894248 SNP 15.8 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG894248 SNP 64.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894248 TOG 3,183,824 - 3,186,891 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894248 TOG 8,988,547 - 8,991,996 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894248 TOG 53,048,756 - 53,052,144 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894248 TOG 41,748,010 - 41,752,807 (cM) Automated name-based, Automated name-based View Maps
TOG894358 TOG 6,312,041 - 6,313,482 chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG894358 SNP 110 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG894358 TOG 6,687,137 - 6,688,462 (cM) Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894358_200 SNP 59.8 (cM) Automated name-based, Automated name-based View Maps
TOG894408 TOG 20,893,774 - 20,900,512 cowpea - VuCookUCDavis2009 - VuLG04 3_197_TOG894408_1_735 SNP 29 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894408 TOG 6,254,426 - 6,256,701 (cM) Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG894408 SNP 31.5 (cM) Automated name-based, Automated name-based View Maps
TOG894632 TOG 12,974,208 - 12,976,903 cowpea - VuCookUCDavis2009 - VuLG01 4_049_TOG894632_1_204 SNP 32.54 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 4_181_TOG894632_1_86 SNP 32.54 (cM) Automated name-based, Automated name-based View Maps
TOG894662 TOG 50,498,714 - 50,501,395 lotus - LjKazusa200905 - LjChr3 TOG894662 TOG 45,474,652 - 45,479,064 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894662 TOG 2,404,813 - 2,409,761 (cM) Automated name-based, Automated name-based View Maps
TOG894669 TOG 13,313,892 - 13,316,401 peanut - AA_A.duranensis_x_A.stenosperma_e - LG08 Ah2n_TOG894669_2 SNP 34.72 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894669 TOG 40,309,005 - 40,311,474 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894669_429 SNP 10.3 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894669 TOG 13,592,273 - 13,594,547 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894669_956 SNP 10.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_269_TOG894669_2_153 SNP 29.92 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG894669 SNP 77.9 (cM) Automated name-based, Automated name-based View Maps
TOG894699 TOG 10,296,189 - 10,297,887 No other positions
TOG894775 TOG 4,756,620 - 4,760,719 lotus - LjKazusa200905 - LjChr1 TOG894775 TOG 22,400,618 - 22,404,029 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG894775 TOG 5,035,592 - 5,038,691 (cM) Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 4_167_TOG894775_2_671 SNP 57.19 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 4_070_TOG894775_2_601 SNP 57.19 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894775 TOG 35,246,544 - 35,250,529 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894775_104 SNP 63 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG894775 SNP 54.1 (cM) Automated name-based, Automated name-based View Maps
TOG894851 TOG 11,730,656 - 11,741,751 lotus - LjKazusa200905 - LjChr1 TOG894851 TOG 86,639,586 - 86,641,313 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894851 TOG 42,097,629 - 42,100,137 (cM) Automated name-based, Automated name-based View Maps
TOG894880 TOG 1,169,817 - 1,172,962 peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP18 SNP 56.569 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG894880 SNP 127.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894880 TOG 42,055,909 - 42,059,865 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894880 TOG 53,561,143 - 53,564,019 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894880_514 SNP 4.5 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894880_697 SNP 4.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG894880 TOG 1,166,797 - 1,169,240 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG894880 SNP 66.1 (cM) Automated name-based, Automated name-based View Maps
TOG894916 TOG 11,107,243 - 11,112,222 lotus - LjKazusa200905 - LjChr2 TOG894916 TOG 53,331,023 - 53,333,933 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894916 TOG 30,657,859 - 30,662,971 (cM) Automated name-based, Automated name-based View Maps
TOG895380 TOG 18,789,954 - 18,795,923 No other positions
TOG895439 TOG 14,838,705 - 14,840,533 barrel medic - Mt3.0 - MtChr3 TOG935981 TOG 29,300,170 - 29,301,864 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG895439 TOG 10,291,195 - 10,295,218 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG895439 TOG 29,300,170 - 29,301,864 (cM) Automated name-based, Automated name-based View Maps
TOG895467 TOG 50,383,404 - 50,391,014 lotus - LjKazusa200905 - LjChr3 TOG895467 TOG 44,369,820 - 44,376,147 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG11 Ah2n_TOG895467_1 SNP 1.28 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP26 SNP 0.583 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG895467 TOG 3,342,446 - 3,347,932 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG895467 SNP 41.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TOG895467 SNP 131.7 (cM) Automated name-based, Automated name-based View Maps
TOG895630 TOG 12,974,208 - 12,976,903 chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG895630 SNP 75 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG895630_259 SNP 9 (cM) Automated name-based, Automated name-based View Maps