LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmJGI8x
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Gm07
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
SNP
SSR
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmJGI8x [ View Map Set Info ]
Map Name: Gm07
Map Start: 0 cM
Map Stop: 44,683,157 cM
Features by Type:
136 Marker
191 SNP
89 SSR
102 TOG
518 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 518.       of 21 | Next
soybean - GmJGI8x - Gm07
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893951 TOG 544,970 - 548,198 soybean - GmJGI8x - Gm15 TOG893951 TOG 15,642,912 - 15,646,232 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG893951 TOG 13,068,845 - 28,502,898 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG893951 TOG 43,632,068 - 43,639,840 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG893951 TOG 42,366,711 - 42,369,725 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG893951 TOG 15,340,953 - 15,344,170 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG893951 TOG 6,437,645 - 6,440,939 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG893951 TOG 5,628,141 - 5,630,852 (cM) Automated name-based, Automated name-based View Maps
TOG893993 TOG 8,636,128 - 8,638,447 barrel medic - Mt3.0 - MtChr6 TOG893993 TOG 5,181,391 - 5,184,351 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG893993 TOG 67,259,967 - 67,261,739 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG893993 TOG 38,924,803 - 38,926,762 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG893993 TOG 3,571,010 - 3,572,400 (cM) Automated name-based View Maps
TOG894056 TOG 920,783 - 928,567 soybean - GmJGI8x - Gm13 TOG894056 TOG 42,668,125 - 42,676,300 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894056 TOG 8,783,396 - 8,794,894 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG894056 TOG 28,903,525 - 28,911,514 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894056 TOG 1,787,909 - 1,793,148 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG894056 SNP 19.1 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_130_TOG894056_2_322 SNP 13.27 (cM) Automated name-based, Automated name-based View Maps
TOG894161 TOG 8,636,128 - 8,638,447 soybean - GmJGI8x - Gm05 TOG894161 TOG 38,924,803 - 38,926,762 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894161 TOG 3,571,010 - 3,572,400 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr6 TOG894161 TOG 5,181,391 - 5,184,351 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894161 TOG 67,259,967 - 67,261,739 (cM) Automated name-based, Automated name-based View Maps
TOG894331 TOG 15,172,623 - 15,175,231 No other positions
TOG894563 TOG 6,988,174 - 6,993,698 No other positions
TOG894707 TOG 39,330,779 - 39,334,432 No other positions
TOG894720 TOG 42,255,296 - 42,265,311 barrel medic - Mt3.0 - MtChr8 TOG901834 TOG 33,219,082 - 33,221,186 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894720 TOG 47,273,555 - 47,275,156 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894720 TOG 33,219,082 - 33,221,186 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG894720 TOG 2,339,368 - 2,342,269 (cM) Automated name-based View Maps
TOG894746 TOG 10,292,344 - 10,296,078 soybean - GmJGI8x - Gm09 TOG894746 TOG 37,071,029 - 37,075,209 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894746 TOG 12,849,625 - 12,873,726 (cM) Automated name-based, Automated name-based View Maps
TOG894826 TOG 10,260,191 - 10,263,610 No other positions
TOG894928 TOG 10,041,424 - 10,046,548 lotus - LjKazusa200905 - LjChr6 TOG894928 TOG 7,167,147 - 7,171,269 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG929142 TOG 13,727,248 - 13,790,797 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894928 TOG 13,727,248 - 13,790,797 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr6 TOG894928 TOG 16,289,543 - 16,294,288 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894928 TOG 20,767,395 - 20,771,242 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894928 TOG 35,361,252 - 35,365,531 (cM) Automated name-based View Maps
TOG894986 TOG 14,981,315 - 14,983,233 common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG894986 SNP 94.2 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG894986_468 SNP 0 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 3_308_TOG894986_2_896 SNP 47.87 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894986 TOG 27,945,876 - 27,948,390 (cM) Automated name-based, Automated name-based View Maps
TOG895021 TOG 6,988,174 - 6,993,698 pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG895021_411 SNP 93.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_058_TOG895021_1_720 SNP 38.85 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG10 Ah2n_TOG895021_1 SNP 0.65 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_179_TOG895021_1_250 SNP 38.85 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG895021_160 SNP 93.4 (cM) Automated name-based, Automated name-based View Maps
TOG895163 TOG 779,130 - 783,160 lotus - LjKazusa200905 - LjChr3 TOG895163 TOG 64,676,756 - 64,680,685 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895163 SNP 100 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG895163 SNP 36.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG895163 TOG 5,956,968 - 5,962,924 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG895163 TOG 5,062,377 - 5,067,564 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG895723 TOG 64,676,756 - 64,680,685 (cM) Automated name-based, Automated name-based View Maps
TOG895365 TOG 36,025,428 - 36,033,678 lotus - LjKazusa200905 - LjChr2 TOG895365 TOG 47,004,450 - 47,009,690 (cM) Automated name-based, Automated name-based View Maps
TOG895440 TOG 20,597,384 - 20,603,142 barrel medic - Mt3.0 - MtChr1 TOG895440 TOG 9,266,476 - 9,271,960 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG895440 TOG 1,287,736 - 1,293,605 (cM) Automated name-based, Automated name-based View Maps
TOG895723 TOG 779,130 - 783,160 lotus - LjKazusa200905 - LjChr3 TOG895163 TOG 64,676,756 - 64,680,685 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG895723 TOG 64,676,756 - 64,680,685 (cM) Automated name-based, Automated name-based View Maps
TOG895769 TOG 43,129,337 - 43,130,933 soybean - GmJGI8x - Gm17 TOG895769 TOG 1,534,981 - 1,537,511 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG895769 TOG 34,316,488 - 34,317,575 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG895769 TOG 47,822,795 - 47,824,214 (cM) Automated name-based, Automated name-based View Maps
TOG895863 TOG 2,441,669 - 2,443,331 soybean - GmJGI8x - Gm13 TOG895863 TOG 43,685,748 - 43,690,388 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG895863 TOG 30,599,300 - 30,604,183 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG895863 TOG 49,019,011 - 49,056,763 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG895863 TOG 17,165,771 - 17,167,971 (cM) Automated name-based View Maps
TOG895984 TOG 38,521,752 - 38,524,951 barrel medic - Mt3.0 - MtChr4 TOG895984 TOG 30,994,398 - 30,997,306 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG895984 TOG 12,968,911 - 12,972,414 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG895984 SNP 91 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG895984 TOG 13,436,757 - 13,440,168 (cM) Automated name-based View Maps
TOG896098 TOG 6,526,081 - 6,528,935 No other positions
TOG896371 TOG 38,216,901 - 38,221,558 pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG896371_243 SNP 40.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG896371 TOG 30,698,991 - 30,703,448 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG896371 TOG 11,873,529 - 11,877,837 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG961497 TOG 11,873,529 - 11,877,837 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG896371 SNP 96 (cM) Automated name-based, Automated name-based View Maps
TOG896390 TOG 41,949,882 - 41,955,611 peanut - AA_A.duranensis_x_A.stenosperma_e - LG03 Ah2n_TOG896390_2 SNP 42.76 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP50 SNP 60.604 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG896390 TOG 47,035,221 - 47,042,889 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG896390 TOG 2,637,173 - 2,646,698 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG896390 TOG 32,709,541 - 32,715,992 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG896390 SNP 30.8 (cM) Automated name-based, Automated name-based View Maps
TOG896498 TOG 39,746,120 - 39,748,347 barrel medic - Mt3.0 - MtChr4 TOG896498 TOG 26,255,779 - 26,262,725 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG896498_369 SNP 46.7 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG896498 SNP 62.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG896498 TOG 2,141,814 - 2,146,464 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896498 SNP 42.8 (cM) Automated name-based, Automated name-based View Maps
TOG896504 TOG 920,783 - 928,567 pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG896504_263 SNP 10.8 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG896504 SNP 19.1 (cM) Automated name-based, Automated name-based View Maps