LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmJGI8x
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Gm10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
SNP
SSR
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmJGI8x [ View Map Set Info ]
Map Name: Gm10
Map Start: 0 cM
Map Stop: 50,969,635 cM
Features by Type:
139 Marker
227 SNP
93 SSR
126 TOG
585 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 585.       of 24 | Next
soybean - GmJGI8x - Gm10
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893946 TOG 37,420,847 - 37,425,210 soybean - GmJGI8x - Gm20 TOG893946 TOG 32,546,284 - 32,550,477 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG945378 TOG 21,209,942 - 21,213,711 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG893946 TOG 21,209,942 - 21,213,711 (cM) Automated name-based, Automated name-based View Maps
TOG893961 TOG 38,072,039 - 38,074,049 barrel medic - Mt3.0 - MtChr7 TOG893961 TOG 32,970,422 - 32,973,090 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG893961 TOG 20,607,851 - 20,609,894 (cM) Automated name-based, Automated name-based View Maps
TOG893965 TOG 37,796,025 - 37,798,612 lotus - LjKazusa200905 - LjChr1 TOG893965 TOG 79,798,281 - 79,800,163 (cM) Automated name-based, Automated name-based View Maps
TOG894000 TOG 1,586,538 - 1,588,516 barrel medic - Mt3.0 - MtChr1 TOG894000 TOG 23,076,499 - 23,078,083 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894000 TOG 1,538,670 - 1,539,877 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG894000 TOG 39,389,255 - 39,390,737 (cM) Automated name-based, Automated name-based View Maps
TOG894080 TOG 18,991,063 - 18,994,794 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894080_407 SNP 135.7 (cM) Automated name-based, Automated name-based View Maps
TOG894081 TOG 1,283,088 - 1,287,371 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894081_250 SNP 207.6 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_117_TOG894081_1_1677 SNP 71.73 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG894081 TOG 57,947,776 - 57,952,264 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894081 TOG 36,869,054 - 36,873,687 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894081 SNP 79.1 (cM) Automated name-based, Automated name-based View Maps
TOG894224 TOG 37,897,249 - 37,900,132 soybean - GmJGI8x - Gm20 TOG894224 TOG 45,938,652 - 45,943,678 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG894224 SNP 27.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG894224 TOG 20,770,604 - 20,773,165 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894224 TOG 32,721,557 - 32,726,548 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP5 SNP 56.733 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894224_897 SNP 97.8 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894224_121 SNP 97.8 (cM) Automated name-based, Automated name-based View Maps
TOG894321 TOG 39,858,806 - 39,862,513 chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG894321 SNP 30.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_329_TOG894321_1_373 SNP 43.19 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894321_287 SNP 174.3 (cM) Automated name-based, Automated name-based View Maps
TOG894328 TOG 41,031,470 - 41,032,581 barrel medic - Mt3.0 - MtChr8 TOG894328 TOG 33,408,197 - 33,411,200 (cM) Automated name-based, Automated name-based View Maps
TOG894353 TOG 38,072,039 - 38,074,049 barrel medic - Mt3.0 - MtChr7 TOG894353 TOG 32,970,422 - 32,973,090 (cM) Automated name-based, Automated name-based View Maps
TOG894357 TOG 36,984,562 - 36,989,676 chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG894357 SNP 36.3 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG894357 TOG 35,625,095 - 35,626,499 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG894357_2 SNP 76.85 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG894357 TOG 21,449,440 - 21,456,911 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A09 TOG894357 SNP 24.5 (cM) Automated name-based, Automated name-based View Maps
TOG894398 TOG 41,031,470 - 41,032,581 No other positions
TOG894402 TOG 1,586,538 - 1,588,516 soybean - GmJGI8x - Gm02 TOG894402 TOG 1,538,670 - 1,539,877 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG894402 TOG 23,076,499 - 23,078,083 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG894402 TOG 39,389,255 - 39,390,737 (cM) Automated name-based, Automated name-based View Maps
TOG894473 TOG 366,147 - 369,263 cowpea - VuCookUCDavis2009 - VuLG10 3_324_TOG894473_2_81 SNP 0.65 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894473 SNP 0.8 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894473_380 SNP 121.2 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894473 TOG 34,261,264 - 34,265,764 (cM) Automated name-based, Automated name-based View Maps
TOG894496 TOG 43,763,966 - 43,766,762 barrel medic - Mt3.0 - MtChr1 TOG895078 TOG 26,129,937 - 26,133,482 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG894496 TOG 26,129,937 - 26,133,482 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG915521 TOG 26,129,937 - 26,133,482 (cM) Automated name-based, Automated name-based View Maps
TOG894552 TOG 49,202,928 - 49,206,926 lotus - LjKazusa200905 - LjChr2 TOG894552 TOG 30,173,788 - 30,181,632 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG894552 TOG 25,147,664 - 25,157,049 (cM) Automated name-based View Maps
TOG894754 TOG 98,096 - 128,691 peanut - AA_A.duranensis_x_A.stenosperma_e - LG09 Ah2n_TOG894754_2 SNP 0 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894754_151 SNP 135 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894754 TOG 38,902,023 - 38,904,362 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG894754 TOG 17,484,482 - 17,495,948 (cM) Automated name-based, Automated name-based View Maps
TOG894794 TOG 49,599,312 - 49,602,326 cowpea - VuCookUCDavis2009 - VuLG10 3_089_TOG894794_1_474 SNP 72.39 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894794 SNP 79.1 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894794_484 SNP 207.6 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG894794 TOG 57,791,827 - 57,796,722 (cM) Automated name-based, Automated name-based View Maps
TOG894812 TOG 39,068,266 - 39,070,126 cowpea - VuCookUCDavis2009 - VuLG10 3_058_TOG894812_1_312 SNP 42.2 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG894812 SNP 31.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894812 TOG 34,032,315 - 34,035,974 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG894812 TOG 49,058,587 - 49,097,019 (cM) Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894812_567 SNP 104.8 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894812 SNP 39.6 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894812_941 SNP 103.5 (cM) Automated name-based, Automated name-based View Maps
TOG894890 TOG 6,621,911 - 6,623,360 peanut - AA_A.duranensis_x_A.stenosperma_e - LG04 Ah2n_TOG894890_1 SNP 0 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_038_TOG894890_1_175 SNP 17.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A02 TOG894890 SNP 77.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894890_184 SNP 143.5 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894890 SNP 28.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP1068 SNP 8.406 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894890_561 SNP 143.5 (cM) Automated name-based, Automated name-based View Maps
TOG894941 TOG 11,888,993 - 11,894,543 barrel medic - Mt3.0 - MtChr3 TOG894941 TOG 10,495,289 - 10,502,539 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_103_TOG894941_1_91 SNP 64.05 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG894941_394 SNP 49.6 (cM) Automated name-based, Automated name-based View Maps
TOG894968 TOG 6,185,947 - 6,191,914 lotus - LjKazusa200905 - LjChr0 TOG894968 TOG 19,727,745 - 19,733,517 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894968_904 SNP 141.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG894968 TOG 14,729,906 - 14,750,025 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894968 SNP 30.8 (cM) Automated name-based, Automated name-based View Maps
TOG895060 TOG 33,680,068 - 33,683,072 soybean - GmJGI8x - Gm20 TOG895060 TOG 28,403,486 - 28,407,180 (cM) Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895060 SNP 71.3 (cM) Automated name-based, Automated name-based View Maps
TOG895078 TOG 43,763,966 - 43,766,762 barrel medic - Mt3.0 - MtChr1 TOG895078 TOG 26,129,937 - 26,133,482 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG894496 TOG 26,129,937 - 26,133,482 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG915521 TOG 26,129,937 - 26,133,482 (cM) Automated name-based, Automated name-based View Maps
TOG895448 TOG 48,199,556 - 48,206,326 cowpea - VuCookUCDavis2009 - VuLG10 4_221_TOG895448_1_423 SNP 67.44 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG935497 TOG 55,982,420 - 55,986,114 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG895448 TOG 55,982,420 - 55,987,190 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895448 SNP 72.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_350_TOG895448_1_844 SNP 67.44 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG895448_1 SNP 101.75 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP25 SNP 15.128 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_375_TOG895448_1_694 SNP 67.44 (cM) Automated name-based, Automated name-based View Maps