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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set alfalfa-MsJulier2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: alfalfa - MsJulier2003 [ View Map Set Info ]
Map Name: 6
Map Start: 0 cM
Map Stop: 117.01 cM
Features by Type:
9 SSR
9 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 9 of 9.
alfalfa - MsJulier2003 - 6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
MTIC272 SSR 0 No other positions
MTIC134-2 SSR 24.63 No other positions
MTIC134-1 SSR 30.68 No other positions
MTIC153 SSR 60.52 barrel medic - MtYoungUMinn2006 - 6 MTIC153 SSR 33.2 (cM) Automated name-based, Automated name-based View Maps
alfalfa - MsSledge2005 - 6 MTIC153 SSR 39.16 (cM) Automated name-based, Automated name-based View Maps
MTIC250-2 SSR 66.97 No other positions
MTIC250-1 SSR 72.65 No other positions
MTIC343 SSR 80.88 alfalfa - MsSledge2005 - 6 MTIC343 SSR 0 (cM) Automated name-based, Automated name-based View Maps
MTIC14 SSR 100.24 No other positions
MTIC93 SSR 117.01 barrel medic - MtYoungUMinn2006 - 6 MTIC93 SSR 42.5 (cM) Automated name-based, Automated name-based View Maps