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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set alfalfa-MsJulier2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 8
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: alfalfa - MsJulier2003 [ View Map Set Info ]
Map Name: 8
Map Start: 0 cM
Map Stop: 87.17 cM
Features by Type:
13 SSR
13 Total

Map Features

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Items 1 to 13 of 13.
alfalfa - MsJulier2003 - 8
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
MTIC103 SSR 0 barrel medic - MtYoungUMinn2006 - 8 MTIC103 SSR 19.1 (cM) Automated name-based, Automated name-based View Maps
alfalfa - MsSledge2005 - 8 MTIC103 SSR 13.27 (cM) Automated name-based, Automated name-based View Maps
MTIC185 SSR 12.28 barrel medic - MtYoungUMinn2006 - 8 MTIC185 SSR 27.3 (cM) Automated name-based, Automated name-based View Maps
MTIC135-1 SSR 24.52 No other positions
MTIC248 SSR 28.66 No other positions
MTIC77-1 SSR 30.88 No other positions
MTIC135-2 SSR 31.35 No other positions
MTIC299 SSR 40.71 No other positions
MTIC135-3 SSR 41.18 No other positions
MTIC188-1 SSR 49.47 No other positions
MTIC188-2 SSR 52.87 No other positions
ENOD20 SSR 64.74 No other positions
MAA660870 SSR 71.39 alfalfa - MsSledge2005 - 8 MAA660870 SSR 69.73 (cM) Automated name-based, Automated name-based View Maps
MTIC251 SSR 87.17 No other positions