LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set barrel medic-Mt3.0
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps MtChr2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
dCAPS
EST
Marker
SNP
SSR
SSR-BAC
SSR-enriched-cDNA
SSR-enriched-genomic
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: barrel medic - Mt3.0 [ View Map Set Info ]
Map Name: MtChr2
Map Start: 0 cM
Map Stop: 32,199,769 cM
Features by Type:
15 CAPS
6 EST
159 Marker
2 SNP
80 SSR
3 SSR-BAC
2 SSR-enriched-cDNA
4 SSR-enriched-genomic
141 TOG
1 dCAPS
413 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 413.       of 17 | Next
barrel medic - Mt3.0 - MtChr2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893934 TOG 20,763,561 - 20,767,327 soybean - GmJGI8x - Gm13 TOG893934 TOG 35,987,197 - 35,991,903 (cM) Automated name-based, Automated name-based View Maps
TOG893948 TOG 1,511,469 - 1,512,738 lotus - LjKazusa200905 - LjChr4 TOG893948 TOG 5,659,688 - 5,675,496 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG893948 TOG 5,764,883 - 5,765,728 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG893948 TOG 67,953,031 - 67,954,031 (cM) Automated name-based, Automated name-based View Maps
TOG893951 TOG 13,068,845 - 28,502,898 soybean - GmJGI8x - Gm15 TOG893951 TOG 15,642,912 - 15,646,232 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG905379 TOG 15,642,912 - 15,646,232 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG905379 TOG 43,632,068 - 43,639,840 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG893951 TOG 43,632,068 - 43,639,840 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG893951 TOG 15,340,953 - 15,344,170 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG893951 TOG 544,970 - 548,198 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG893951 TOG 6,437,645 - 6,440,939 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG893951 TOG 42,366,711 - 42,369,725 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG893951 TOG 5,628,141 - 5,630,852 (cM) Automated name-based, Automated name-based View Maps
TOG893958 TOG 7,225,114 - 7,230,315 lotus - LjKazusa200905 - LjChr0 TOG893958 TOG 26,270,240 - 26,274,467 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG895127 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG911042 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG893958 TOG 2,301,159 - 2,303,891 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG893958 TOG 31,202,629 - 31,206,771 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG893958 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG897860 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894433 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
TOG893963 TOG 27,635,069 - 27,636,662 soybean - GmJGI8x - Gm14 TOG893963 TOG 2,168,594 - 2,170,255 (cM) Automated name-based, Automated name-based View Maps
TOG894022 TOG 32,032,517 - 32,033,221 soybean - GmJGI8x - Gm06 TOG894022 TOG 11,457,198 - 11,459,090 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894022 TOG 4,342,624 - 4,344,446 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894022_393 SNP 38.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG894022 SNP 63.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG894022 TOG 45,983,446 - 45,985,237 (cM) Automated name-based, Automated name-based View Maps
TOG894056 TOG 28,903,525 - 28,911,514 soybean - GmJGI8x - Gm13 TOG894056 TOG 42,668,125 - 42,676,300 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894056 TOG 8,783,396 - 8,794,894 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894056 TOG 1,787,909 - 1,793,148 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG894056 SNP 19.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG894056 TOG 920,783 - 928,567 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_130_TOG894056_2_322 SNP 13.27 (cM) Automated name-based, Automated name-based View Maps
TOG894070 TOG 784,154 - 792,321 soybean - GmJGI8x - Gm02 TOG894070 TOG 50,232,628 - 50,239,649 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894070 SNP 3.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 SNP2 SNP 8.646 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A07 TOG894070 SNP 11.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG894070 TOG 1,554,060 - 1,559,256 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894070_285 SNP 64.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894070 TOG 40,276,785 - 40,278,270 (cM) Automated name-based View Maps
TOG894083 TOG 27,486,066 - 27,489,799 soybean - GmJGI8x - Gm15 TOG894083 TOG 2,843,511 - 2,847,233 (cM) Automated name-based, Automated name-based View Maps
TOG894236 TOG 30,798,012 - 30,802,617 peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP6 SNP 65.821 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894236 TOG 547,055 - 550,599 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG894236 SNP 129.2 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG894236 SNP 0 (cM) Automated name-based, Automated name-based View Maps
TOG894433 TOG 7,225,114 - 7,230,315 soybean - GmJGI8x - Gm13 TOG894433 TOG 31,202,629 - 31,206,771 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894433 TOG 26,270,240 - 26,274,467 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG895127 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG911042 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG893958 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG897860 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894433 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
TOG894468 TOG 7,718,871 - 7,721,027 No other positions
TOG894483 TOG 4,060,863 - 4,064,826 cowpea - VuCookUCDavis2009 - VuLG11 4_082_TOG894483_2_639 SNP 58.44 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG894483 TOG 66,420,623 - 66,425,385 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG894483_474 SNP 84.4 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG894483 SNP 44.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894483 TOG 5,606,986 - 5,611,938 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG894483 SNP 55.8 (cM) Automated name-based, Automated name-based View Maps
TOG894516 TOG 8,852,636 - 8,857,086 soybean - GmJGI8x - Gm15 TOG894516 TOG 9,449,781 - 9,452,538 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG894516 TOG 1,180,261 - 1,184,160 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG11 4_076_TOG894516_1_54 SNP 40.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG894516_303 SNP 68.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG11 4_137_TOG894516_1_333 SNP 34.91 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG894516 SNP 38.1 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG894516 SNP 67.6 (cM) Automated name-based, Automated name-based View Maps
TOG894529 TOG 28,652,416 - 28,654,168 soybean - GmJGI8x - Gm13 TOG900465 TOG 42,478,225 - 42,479,914 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG938474 TOG 42,478,225 - 42,479,914 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG894529 TOG 42,478,225 - 42,479,914 (cM) Automated name-based, Automated name-based View Maps
TOG894619 TOG 17,498,895 - 17,501,279 lotus - LjKazusa200905 - LjChr3 TOG894619 TOG 18,254,684 - 18,257,335 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG07 Ah2n_TOG894619_1 SNP 63.59 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894619 TOG 13,903,709 - 13,906,435 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG894619 SNP 88.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG894619 SNP 35 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG894619_735 SNP 45.7 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG894619_593 SNP 45.7 (cM) Automated name-based, Automated name-based View Maps
TOG894749 TOG 7,172,710 - 7,188,745 lotus - LjKazusa200905 - LjChr0 TOG894749 TOG 26,236,584 - 26,241,407 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG894749 TOG 31,245,968 - 31,251,801 (cM) Automated name-based, Automated name-based View Maps
TOG894752 TOG 966,689 - 970,239 soybean - GmJGI8x - Gm08 TOG894752 TOG 15,030,445 - 15,036,675 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894752 TOG 81,693,369 - 81,696,352 (cM) Automated name-based, Automated name-based View Maps
TOG894869 TOG 10,511,054 - 10,517,030 pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG894869_570 SNP 63.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894869 TOG 11,311,264 - 11,317,373 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG11 4_165_TOG894869_1_388 SNP 26.66 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG11 4_068_TOG894869_1_97 SNP 26.66 (cM) Automated name-based, Automated name-based View Maps
TOG894958 TOG 19,216,517 - 19,220,766 soybean - GmJGI8x - Gm15 TOG894958 TOG 49,208,608 - 49,213,475 (cM) Automated name-based, Automated name-based View Maps
TOG894972 TOG 539,723 - 542,875 soybean - GmJGI8x - Gm08 TOG894972 TOG 15,173,720 - 15,177,049 (cM) Automated name-based, Automated name-based View Maps
TOG894980 TOG 18,541,354 - 18,545,345 soybean - GmJGI8x - Gm15 TOG894980 TOG 49,320,891 - 49,324,133 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894980 TOG 12,646,661 - 12,648,256 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894980 TOG 20,537,941 - 20,539,968 (cM) Automated name-based, Automated name-based View Maps
TOG895054 TOG 29,611,228 - 29,612,950 peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP21 SNP 79.804 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG895054 TOG 16,666,516 - 16,668,100 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG895054_2 SNP 60.92 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_279_TOG895054_2_300 SNP 5.62 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG895054 SNP 124.8 (cM) Automated name-based, Automated name-based View Maps
TOG895089 TOG 274,000 - 275,402 lotus - LjKazusa200905 - LjChr0 TOG914951 TOG 5,739,859 - 5,740,873 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG895089 TOG 138,217 - 139,655 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895089 TOG 5,739,859 - 5,740,873 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG914951 TOG 138,217 - 139,655 (cM) Automated name-based, Automated name-based View Maps
TOG895127 TOG 7,225,114 - 7,230,315 soybean - GmJGI8x - Gm15 TOG895127 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG895127 TOG 31,202,629 - 31,206,771 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG911042 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895127 TOG 26,270,240 - 26,274,467 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_195_TOG895127_1_445 SNP 1.97 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG893958 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG895127_367 SNP 108.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG897860 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894433 TOG 7,976,470 - 7,989,141 (cM) Automated name-based, Automated name-based View Maps