LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps PvLG07
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvCookUCDavis2009 [ View Map Set Info ]
Map Name: PvLG07
Map Start: 0 cM
Map Stop: 83.3 cM
Features by Type:
57 SNP
57 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 57.       of 3 | Next
common bean - PvCookUCDavis2009 - PvLG07
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Pv_TOG897607 SNP 83.3 barrel medic - Mt3.0 - MtChr7 TOG897607 TOG 845,071 - 850,485 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_187_TOG897607_2_181 SNP 88.19 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG897607 TOG 46,591,333 - 46,595,522 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG897607_46 SNP 85.2 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG894226 SNP 82.5 pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894226_876 SNP 87.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894226 TOG 61,870,053 - 61,876,736 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG902906 SNP 78.3 barrel medic - Mt3.0 - MtChr7 TOG902906 TOG 857,161 - 861,372 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG902906 TOG 61,388,055 - 61,393,103 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_231_TOG902906_1_994 SNP 85.22 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG902906 SNP 15.1 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG896348 SNP 73.2 barrel medic - Mt3.0 - MtChr7 TOG896348 TOG 5,796,963 - 5,802,640 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG896348 TOG 60,926,875 - 60,930,546 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG896348 SNP 15.9 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 4_055_TOG896348_1_95 SNP 83.58 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG900820 SNP 73.2 soybean - GmJGI8x - Gm02 TOG900820 TOG 8,427,155 - 8,429,973 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_076_TOG900820_1_361 SNP 83.91 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG894320 SNP 71.6 barrel medic - Mt3.0 - MtChr7 TOG894320 TOG 5,321,982 - 5,327,671 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894320_330 SNP 78.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894320 TOG 8,651,128 - 8,654,991 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 4_120_TOG894320_2_213 SNP 81.93 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 4_043_TOG894320_2_186 SNP 107.7 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG918273 SNP 71.6 soybean - GmJGI8x - Gm02 TOG918273 TOG 8,645,658 - 8,648,163 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG918273 TOG 5,518,776 - 5,523,696 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG918273 TOG 60,787,768 - 60,790,346 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG902872 SNP 71.6 soybean - GmJGI8x - Gm08 TOG902872 TOG 23,428,108 - 23,432,302 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG902872_138 SNP 78.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG902872 TOG 60,671,195 - 60,672,757 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG902872 TOG 62,790,444 - 62,802,834 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG05 Ah2n_TOG902872_2 SNP 7.12 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG902872 TOG 5,157,938 - 5,162,875 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG899689 SNP 61.1 chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG899689 SNP 15.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG899689 TOG 59,179,117 - 59,180,942 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_105_TOG899689_1_403 SNP 75.28 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG899689 TOG 2,902,999 - 2,905,106 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG902629 SNP 54.9 soybean - GmJGI8x - Gm18 TOG902629 TOG 58,125,155 - 58,130,885 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP141 SNP 66.215 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG900992 SNP 51.6 pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG900992_480 SNP 67.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG900992 TOG 43,712,241 - 43,716,278 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG900992 TOG 57,536,304 - 57,538,068 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG900992 TOG 20,056,607 - 20,060,434 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_190_TOG900992_1_358 SNP 68.22 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG923107 SNP 51.6 pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG923107_539 SNP 67.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG923107 TOG 57,596,914 - 57,599,618 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG923107 SNP 22.3 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG896253 SNP 50.8 cowpea - VuCookUCDavis2009 - VuLG07 3_128_TOG896253_1_264 SNP 67.24 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG896253 TOG 19,830,294 - 19,835,099 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG896253 TOG 43,884,048 - 43,888,343 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG896253 TOG 57,349,795 - 57,352,917 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 SNP45 SNP 71.725 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG896253 SNP 22.7 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG909835 SNP 50.8 peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TOG909835 SNP 37.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG18 Ah2n_TOG909835_2 SNP 13.84 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_368_TOG909835_2_332 SNP 67.24 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG909835_234 SNP 67.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG909835 TOG 19,811,857 - 19,815,871 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 SNP183 SNP 71.725 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG910318 SNP 45.6 cowpea - VuCookUCDavis2009 - VuLG07 3_177_TOG910318_1_138 SNP 63.62 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG910318 TOG 56,539,842 - 56,541,894 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG910318 SNP 21.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG910318 TOG 18,812,550 - 18,814,256 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG910318 TOG 44,514,895 - 44,515,637 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG895662 SNP 45.6 barrel medic - Mt3.0 - MtChr7 TOG895662 TOG 18,891,795 - 18,895,292 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG895662_434 SNP 65.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG895662 TOG 56,558,863 - 56,562,514 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG897016 SNP 44.8 soybean - GmJGI8x - Gm07 TOG897016 TOG 7,552,617 - 7,560,314 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG897016 SNP 20.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG897016 TOG 37,105,781 - 37,116,629 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG897016_434 SNP 88.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG897016 TOG 2,115,910 - 2,126,342 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG18 Ah2n_TOG897016_1 SNP 6.74 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG896613 SNP 44.8 pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG896613_234 SNP 60.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG896613 TOG 55,452,029 - 55,453,557 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG896613_191 SNP 60.8 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG896613 TOG 35,235,078 - 35,236,549 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG896613 TOG 17,783,155 - 17,784,671 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG896613 SNP 20.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 4_180_TOG896613_1_1102 SNP 61.32 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG908776 SNP 44.8 lotus - LjKazusa200905 - LjChr1 TOG908776 TOG 36,689,134 - 36,690,897 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG908776 TOG 44,946,615 - 44,948,363 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG908776 SNP 21.1 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG908776_520 SNP 61.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG908776 TOG 18,054,300 - 18,058,147 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_350_TOG908776_1_183 SNP 62.3 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG937303 SNP 44.8 soybean - GmJGI8x - Gm18 TOG937303 TOG 55,981,198 - 56,013,556 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG937303 TOG 18,035,757 - 18,038,402 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_272_TOG937303_2_138 SNP 61.97 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TOG937303 SNP 35.1 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_328_TOG937303_2_96 SNP 61.97 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG937303 TOG 36,643,538 - 36,647,303 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG937303 SNP 21.1 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG937303_35 SNP 61.4 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG925843 SNP 42.4 chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG925843 SNP 34.5 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_230_TOG925843_1_311 SNP 60.01 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG925843 TOG 45,563,627 - 45,567,950 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG895162 SNP 42.4 soybean - GmJGI8x - Gm16 TOG895162 TOG 37,261,716 - 37,266,553 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG895162 TOG 26,292,445 - 26,294,756 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG895162 SNP 19.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG895162 TOG 45,751,409 - 45,755,488 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG894604 SNP 42.4 soybean - GmJGI8x - Gm18 TOG894604 TOG 54,553,673 - 54,557,331 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG916702 SNP 42.4 soybean - GmJGI8x - Gm18 TOG916702 TOG 54,577,829 - 54,581,365 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_172_TOG916702_1_361 SNP 60.01 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG916702_1011 SNP 46.1 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG905195 SNP 42.4 cowpea - VuCookUCDavis2009 - VuLG07 3_008_TOG905195_2_1282 SNP 59.68 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG905195 SNP 19.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG905195 TOG 54,243,265 - 54,248,286 (cM) Automated name-based, Automated name-based View Maps