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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A1
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-BAC
SSR-enriched-cDNA
SSR-enriched-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: A1
Map Start: 0 cM
Map Stop: 155.14 cM
Features by Type:
14 EST
2 SSR-BAC
8 SSR-enriched-cDNA
15 SSR-enriched-genomic
39 Total

Map Features

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Items 1 to 25 of 39.       of 2 | Next
white clover - TrZhang2007 - A1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
prs461 EST 0 white clover - TrZhang2007 - A2 prs461 EST 66.22 (cM) Automated name-based View Maps
RCS1632 SSR-enriched-cDNA 9.94 white clover - TrZhang2007 - A2 RCS1632 SSR-enriched-cDNA 39.79 (cM) Automated name-based View Maps
ats054 SSR-enriched-genomic 12.47 No other positions
RCS4903 EST 15.46 No other positions
prs426 EST 18.59 white clover - TrZhang2007 - A2 prs426 EST 8.26 (cM) Automated name-based View Maps
Mt1E04(2) SSR-BAC 22.15 No other positions
RCS5744 SSR-enriched-genomic 24.65 No other positions
RCS4472 EST 26.54 No other positions
ats002 SSR-enriched-genomic 30.33 white clover - TrZhang2007 - A2 ats002 SSR-enriched-genomic 35.75 (cM) Automated name-based View Maps
RCS1547 SSR-enriched-genomic 36.19 No other positions
RCS4104 EST 37.02 white clover - TrZhang2007 - A2 RCS4104 EST 47.95 (cM) Automated name-based View Maps
RCS1628 SSR-enriched-cDNA 39.17 No other positions
RCS3828 EST 46.76 No other positions
RCS0889 SSR-enriched-genomic 50.96 white clover - TrZhang2007 - C2 RCS0889 SSR-enriched-genomic 114.57 (cM) Automated name-based View Maps
RCS1333 SSR-enriched-cDNA 52.35 white clover - TrZhang2007 - B2 RCS1333 SSR-enriched-cDNA 82.92 (cM) Automated name-based View Maps
BF258 EST 63.32 white clover - TrZhang2007 - A2 BF258 EST 12.12 (cM) Automated name-based View Maps
RCS1479 SSR-enriched-cDNA 63.5 No other positions
RCS2874 SSR-enriched-genomic 64.48 No other positions
TRSSRB03C01 SSR-enriched-genomic 69.16 white clover - TrZhang2007 - E1 TRSSRB03C01 SSR-enriched-genomic 71.18 (cM) Automated name-based View Maps
TRSSRB02G07 SSR-enriched-genomic 70.83 No other positions
RCS3832 EST 72.23 No other positions
RCS1534 SSR-enriched-cDNA 73.6 white clover - TrZhang2007 - A2 RCS1534 SSR-enriched-cDNA 52.89 (cM) Automated name-based View Maps
ats029 SSR-enriched-genomic 74.08 white clover - TrZhang2007 - A2 ats029 SSR-enriched-genomic 78.02 (cM) Automated name-based View Maps
RCS1336 SSR-enriched-cDNA 80.14 white clover - TrZhang2007 - A2 RCS1336 SSR-enriched-cDNA 52.27 (cM) Automated name-based View Maps
RCS3267 SSR-enriched-genomic 82.08 white clover - TrZhang2007 - G1 RCS3267 SSR-enriched-genomic 60.78 (cM) Automated name-based View Maps