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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set white clover-TrZhang2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps B2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
SSR-BAC
SSR-enriched-cDNA
SSR-enriched-genomic
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: white clover - TrZhang2007 [ View Map Set Info ]
Map Name: B2
Map Start: 0 cM
Map Stop: 111.33 cM
Features by Type:
15 EST
1 SSR-BAC
7 SSR-enriched-cDNA
6 SSR-enriched-genomic
29 Total

Map Features

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Items 1 to 25 of 29.       of 2 | Next
white clover - TrZhang2007 - B2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AA03 EST 0 No other positions
RCS3744 EST 18.49 white clover - TrZhang2007 - B1 RCS3744 EST 63.99 (cM) Automated name-based View Maps
RCS1225 SSR-enriched-cDNA 28.83 No other positions
RCS5795 SSR-enriched-genomic 36.32 No other positions
RCS3990 EST 36.57 No other positions
RCS4046 EST 36.67 white clover - TrZhang2007 - B1 RCS4046 EST 56.72 (cM) Automated name-based View Maps
RCS3825 EST 39.35 white clover - TrZhang2007 - B1 RCS3825 EST 127.14 (cM) Automated name-based View Maps
RCS1224 SSR-enriched-cDNA 40.47 white clover - TrZhang2007 - C2 RCS1224 SSR-enriched-cDNA 9.21 (cM) Automated name-based View Maps
RCS4144 EST 41.97 No other positions
RCS2052 SSR-enriched-genomic 42.86 No other positions
prs734 EST 48.68 No other positions
BG269 EST 53.5 No other positions
RCS0916 SSR-enriched-genomic 61.33 No other positions
RCS1879 SSR-enriched-cDNA 65.07 No other positions
RCS0007 SSR-enriched-cDNA 67.35 No other positions
RCS2962 SSR-enriched-cDNA 73.53 white clover - TrZhang2007 - G1 RCS2962 SSR-enriched-cDNA 30.52 (cM) Automated name-based View Maps
ats055 SSR-enriched-genomic 78.31 white clover - TrZhang2007 - D1 ats055 SSR-enriched-genomic 35.38 (cM) Automated name-based View Maps
BG283 EST 78.87 No other positions
RCS2806 SSR-enriched-cDNA 80.91 white clover - TrZhang2007 - A2 RCS2806 SSR-enriched-cDNA 0 (cM) Automated name-based View Maps
RCS1333 SSR-enriched-cDNA 82.92 white clover - TrZhang2007 - A1 RCS1333 SSR-enriched-cDNA 52.35 (cM) Automated name-based View Maps
BG131 EST 83 No other positions
Mt1B06(2) SSR-BAC 89.93 No other positions
RCS5441 EST 93.62 No other positions
AW304 EST 95.33 No other positions
AL79 EST 97.18 No other positions